Data_Sheet_1_Nitrogen Cycling Microbial Diversity and Operational Taxonomic Unit Clustering: When to Prioritize Accuracy Over Speed.pdf by Sada Egenriether (12721532)

“…For example, an OTU clustering method that can accurately characterize sequences harboring comparatively little diversity may not accurately resolve the diversity within a gene comprised of a large number of clades. This study uses two nitrogen cycling genes, nifH, a gene which segregates into only three distinct clades, and nrfA, a gene which is comprised of at least eighteen clades, to investigate differences which may arise when using heuristic OTU clustering (abundance-based greedy clustering, AGC) vs. true hierarchical OTU clustering (Matthews Correlation Coefficient optimizing algorithm, Opti-MCC). …”

Image_7_Proposing a novel molecular subtyping scheme for predicting distant recurrence-free survival in breast cancer post-neoadjuvant chemotherapy with close correlation to metabo... by Jin Huang (146235)

“…We used the Metascape tool for enrichment analyses, and ‘WGCNA’ was utilized to establish co-expression networks, selecting the soft threshold power with the ‘pickSoftThreshold’ algorithm. We integrated ten machine learning algorithms and 101 algorithm combinations to identify key genes associated with distant recurrence in BC. …”

Image_2_Proposing a novel molecular subtyping scheme for predicting distant recurrence-free survival in breast cancer post-neoadjuvant chemotherapy with close correlation to metabo... by Jin Huang (146235)

“…We used the Metascape tool for enrichment analyses, and ‘WGCNA’ was utilized to establish co-expression networks, selecting the soft threshold power with the ‘pickSoftThreshold’ algorithm. We integrated ten machine learning algorithms and 101 algorithm combinations to identify key genes associated with distant recurrence in BC. …”

Image_4_Proposing a novel molecular subtyping scheme for predicting distant recurrence-free survival in breast cancer post-neoadjuvant chemotherapy with close correlation to metabo... by Jin Huang (146235)

“…We used the Metascape tool for enrichment analyses, and ‘WGCNA’ was utilized to establish co-expression networks, selecting the soft threshold power with the ‘pickSoftThreshold’ algorithm. We integrated ten machine learning algorithms and 101 algorithm combinations to identify key genes associated with distant recurrence in BC. …”

Table_1_Proposing a novel molecular subtyping scheme for predicting distant recurrence-free survival in breast cancer post-neoadjuvant chemotherapy with close correlation to metabo... by Jin Huang (146235)

“…We used the Metascape tool for enrichment analyses, and ‘WGCNA’ was utilized to establish co-expression networks, selecting the soft threshold power with the ‘pickSoftThreshold’ algorithm. We integrated ten machine learning algorithms and 101 algorithm combinations to identify key genes associated with distant recurrence in BC. …”

Image_5_Proposing a novel molecular subtyping scheme for predicting distant recurrence-free survival in breast cancer post-neoadjuvant chemotherapy with close correlation to metabo... by Jin Huang (146235)

“…We used the Metascape tool for enrichment analyses, and ‘WGCNA’ was utilized to establish co-expression networks, selecting the soft threshold power with the ‘pickSoftThreshold’ algorithm. We integrated ten machine learning algorithms and 101 algorithm combinations to identify key genes associated with distant recurrence in BC. …”

Image_8_Proposing a novel molecular subtyping scheme for predicting distant recurrence-free survival in breast cancer post-neoadjuvant chemotherapy with close correlation to metabo... by Jin Huang (146235)

“…We used the Metascape tool for enrichment analyses, and ‘WGCNA’ was utilized to establish co-expression networks, selecting the soft threshold power with the ‘pickSoftThreshold’ algorithm. We integrated ten machine learning algorithms and 101 algorithm combinations to identify key genes associated with distant recurrence in BC. …”

Image_1_Proposing a novel molecular subtyping scheme for predicting distant recurrence-free survival in breast cancer post-neoadjuvant chemotherapy with close correlation to metabo... by Jin Huang (146235)

“…We used the Metascape tool for enrichment analyses, and ‘WGCNA’ was utilized to establish co-expression networks, selecting the soft threshold power with the ‘pickSoftThreshold’ algorithm. We integrated ten machine learning algorithms and 101 algorithm combinations to identify key genes associated with distant recurrence in BC. …”

Image_6_Proposing a novel molecular subtyping scheme for predicting distant recurrence-free survival in breast cancer post-neoadjuvant chemotherapy with close correlation to metabo... by Jin Huang (146235)

“…We used the Metascape tool for enrichment analyses, and ‘WGCNA’ was utilized to establish co-expression networks, selecting the soft threshold power with the ‘pickSoftThreshold’ algorithm. We integrated ten machine learning algorithms and 101 algorithm combinations to identify key genes associated with distant recurrence in BC. …”

Image_3_Proposing a novel molecular subtyping scheme for predicting distant recurrence-free survival in breast cancer post-neoadjuvant chemotherapy with close correlation to metabo... by Jin Huang (146235)

“…We used the Metascape tool for enrichment analyses, and ‘WGCNA’ was utilized to establish co-expression networks, selecting the soft threshold power with the ‘pickSoftThreshold’ algorithm. We integrated ten machine learning algorithms and 101 algorithm combinations to identify key genes associated with distant recurrence in BC. …”

Training and test routes for simulated agents navigating using insect inspired strategies by Amany Said Amin (11234025)

“…<p dir="ltr">These folders contain train routes, test routes and terrain information (labelled as per filenames) for a set of insect-inspired route navigation experiments conducted in Unity.</p><p dir="ltr">For code analysing this data see: <a href="https://github.com/amanyazevedoamin/RecapitulatedTrackConvergence" rel="noreferrer" target="_blank">https://github.com/amanyazevedoamin/RecapitulatedTrackConvergence</a></p><p dir="ltr">All trajectories are 2D and stored as csv files with headings of 'x','y' and 'heading' (degrees)</p><p dir="ltr">The folder names encode the following:</p><p dir="ltr">The first 3 characters corresponds to the training route length: "EXT" is 20m, "LON" is a longer 100m training route</p><p dir="ltr">The second 3 characters refer to the route recapitulation strategy in use.…”

Supplementary Material 9 by Nishitha R Kumar (19750617)

“…</li><li><b>Computational efficiency:</b> CD-HIT optimizes data processing by clustering sequences before applying machine learning models, making large-scale genomic analyses more feasible.…”

Table_1_Landscape of Immune Microenvironment Under Immune Cell Infiltration Pattern in Breast Cancer.xlsx by Qianhui Xu (10517717)

“…The identification of the ICI patterns within individual tumors based on the ICI score, developed under the ICI-related signature genes, contributed into dissecting biological processes, clinical outcome, immune cells infiltration, immunotherapeutic effect, and genetic variation. …”

DataSheet_1_Landscape of Immune Microenvironment Under Immune Cell Infiltration Pattern in Breast Cancer.docx by Qianhui Xu (10517717)

“…The identification of the ICI patterns within individual tumors based on the ICI score, developed under the ICI-related signature genes, contributed into dissecting biological processes, clinical outcome, immune cells infiltration, immunotherapeutic effect, and genetic variation. …”

Image_1_An EGFR L858R mutation identified in 1862 Chinese NSCLC patients can be a promising neoantigen vaccine therapeutic strategy.tif by Jing Lin (50818)

“…HLA LOH was inferred using the lohhla algorithm and TMB were quantified by counting the total number of non-synonymous ones based on our panel data. …”

Table_1_An EGFR L858R mutation identified in 1862 Chinese NSCLC patients can be a promising neoantigen vaccine therapeutic strategy.xlsx by Jing Lin (50818)

“…HLA LOH was inferred using the lohhla algorithm and TMB were quantified by counting the total number of non-synonymous ones based on our panel data. …”

DataSheet_2_An EGFR L858R mutation identified in 1862 Chinese NSCLC patients can be a promising neoantigen vaccine therapeutic strategy.xlsx by Jing Lin (50818)

“…HLA LOH was inferred using the lohhla algorithm and TMB were quantified by counting the total number of non-synonymous ones based on our panel data. …”

Table_2_An EGFR L858R mutation identified in 1862 Chinese NSCLC patients can be a promising neoantigen vaccine therapeutic strategy.xlsx by Jing Lin (50818)

“…HLA LOH was inferred using the lohhla algorithm and TMB were quantified by counting the total number of non-synonymous ones based on our panel data. …”

DataSheet_1_An EGFR L858R mutation identified in 1862 Chinese NSCLC patients can be a promising neoantigen vaccine therapeutic strategy.docx by Jing Lin (50818)

“…HLA LOH was inferred using the lohhla algorithm and TMB were quantified by counting the total number of non-synonymous ones based on our panel data. …”

An ecosystem of community members and experts to track multidimensional equity in healthcare coverage and health outcomes by Bryan Patenaude (12264504)

“…Partners co-developed the protocol and led primary data collection. The results were featured in presentations from the partners to the Ugandan and Bangladeshi ministries of health and regional health offices, helping to advance immunization efforts and supplement analysts’ administrative data to monitor health system performance. …”