Supplemental material for "Method of Manufactured Solutions Code Verification of Elastostatic Solid Mechanics Problems in a Commercial Finite Element Solver" by Kenneth Aycock (5131472)

“…<p dir="ltr">Analysis notebook (Jupyter/Python) and ABAQUS input files for:</p><p dir="ltr">Aycock, K. …”

Complex Eigenvalues, Orthogonality, and QR Factorization: Analytical Proofs and Numerical Verification by Umar Tabbsum (22058780)

“…These results are then validated through computational experiments using Python with the NumPy and SciPy libraries.</p><p dir="ltr">Key computational techniques include:</p><ol><li>Eigenvalue and Eigenvector Computation: Generation of random Hermitian matrices and computation of their eigenvalues and eigenvectors. …”

A high-performance and highly reusable fast multipole method library and its application to solvation energy calculations at virus-scale by Tingyu Wang (12342757)

“…It empowers researchers to compute solvation energy at the scale of viruses interactively via easy-to-use Python interfaces. The 1/N convergence rate observed in mesh-refinement studies confirms code correctness, and result comparison with other trusted PB software shows agreement using a wide range of proteins.Performance results report timings and breakdowns with between 8,000 and 2 million boundary elements and confirm the linear complexity in both time and space. …”

OpenColab project: OpenSim in Google colaboratory to explore biomechanics on the web by Hossein Mokhtarzadeh (13205165)

“…It is available for many users with bindings in MATLAB, Python, and Java <i>via</i> its application programming interfaces (APIs). …”

Overview of generalized weighted averages. by Nobuhito Manome (8882084)

“…GWA-UCB1 outperformed G-UCB1, UCB1-Tuned, and Thompson sampling in most problem settings and can be useful in many situations. …”

Artifact and instructions to generate experimental results for Euro-Par 2019 paper "A Comparison of Random Task Graph Generation Methods for Scheduling Problems" by Louis-Claude Canon (569406)

Instances, file format, generator script and results for the Resource Constrained Project Scheduling Problem with a flexible Project Structure and Consumption and Production of Res... by Tom van der Beek (10110637)

DataSheet_2_FindTargetsWEB: A User-Friendly Tool for Identification of Potential Therapeutic Targets in Metabolic Networks of Bacteria.zip by Thiago Castanheira Merigueti (6912842)

“…The web application was developed in Python using COBRApy and Django.</p><p>Results: The proposed method was demonstrated to be robust enough to process even non-curated, incomplete, or imprecise metabolic networks, in addition to integrated host-pathogen models. …”

Table_1_FindTargetsWEB: A User-Friendly Tool for Identification of Potential Therapeutic Targets in Metabolic Networks of Bacteria.xlsx by Thiago Castanheira Merigueti (6912842)

“…The web application was developed in Python using COBRApy and Django.</p><p>Results: The proposed method was demonstrated to be robust enough to process even non-curated, incomplete, or imprecise metabolic networks, in addition to integrated host-pathogen models. …”

DataSheet_1_FindTargetsWEB: A User-Friendly Tool for Identification of Potential Therapeutic Targets in Metabolic Networks of Bacteria.xlsx by Thiago Castanheira Merigueti (6912842)

“…The web application was developed in Python using COBRApy and Django.</p><p>Results: The proposed method was demonstrated to be robust enough to process even non-curated, incomplete, or imprecise metabolic networks, in addition to integrated host-pathogen models. …”

Evolution of GCC and k-cores over the quarantine. by Matteo Serafino (11599593)

CogLink by Mien Brabeeba Wang (18853391)

Spatiotemporal Soil Erosion Dataset for the Yarlung Tsangpo River Basin (1990–2100) by peng xin (21382394)

Comparison of visualization techniques. by László Bántay (18530067)

“…The applicability of the method is presented in an industrial alarm management problem and in the analysis of clickstreams of a website. …”

Statistics of the source data. by László Bántay (18530067)

“…The applicability of the method is presented in an industrial alarm management problem and in the analysis of clickstreams of a website. …”

Zip file containing the following: eiFlux models for all examples presented in this article. by Daniel J. Lugar (12290519)

Land use allocation optimization using Genetic Programming by Moritz Hildemann (14521580)

“…<p>The figures contain Pareto fronts for multi-objective land use allocation optimizations. </p> <p>The results are reproducible with the following Python repository on Mendeley Data: https://data.mendeley.com/datasets/4tw223jvjv/draft?…”

PyPEFAn Integrated Framework for Data-Driven Protein Engineering by Niklas E. Siedhoff (11133851)

“…Here, we present a general-purpose framework (PyPEF: pythonic protein engineering framework) for performing data-driven protein engineering using machine learning methods combined with techniques from signal processing and statistical physics. …”

Comparison of likelihoodist and Bayesian probability densities. by Laura Marie Helleckes (12206910)

Measurements and maximum likelihood estimate of <i>C</i>. <i>glutamicum</i> growth Monod model. by Laura Marie Helleckes (12206910)