Folder with all data and algorithms by Jorge Servert Lerdo de Tejada (22290001)

“…In this study, we present an open-source, Python-based computational framework that unifies photon transport modeling, probe geometry optimization, and photothermal safety assessment into a single workflow. …”

Hippocampal and cortical activity reflect early hyperexcitability in an Alzheimer's mouse model by Marina Diachenko (19739092)

“…</p><p dir="ltr">All data are available upon request. The standalone Python implementation of the fE/I algorithm is available under a CC-BY-NC-SA license at <a href="https://github.com/arthur-ervin/crosci" target="_blank">https://github.com/arthur-ervin/crosci</a>. …”

3D PD-Controlled Nanorobot Swarm Simulation for Targeted Cancer and BBB Therapy by Umar Tabbsum (22058780)

“…</p><p dir="ltr">Implemented in Python (NumPy, Matplotlib, 3D visualization), the framework is fully annotated and reproducible. …”

Elements: Streaming Molecular Dynamics Simulation Trajectories for Direct Analysis – Applications to Sub-Picosecond Dynamics in Microsecond Simulations by Matthias Heyden (17087794)

“…This eliminates the need for intermediate storage and allows immediate access to high-frequency fluctuations and vibrational signatures that would otherwise be inaccessible. We have implemented this streaming interface in the MD engines NAMD, LAMMPS, and GROMACS</p><p dir="ltr">On the client side, we developed the IMDClient Python package which receives the streamed data, stores into a custom buffer, and provides it to external tools as NumPy arrays, facilitating integration with scientific computing workflows. …”

Methodological Approach Based on Structural Parameters, Vibrational Frequencies, and MMFF94 Bond Charge Increments for Platinum-Based Compounds by Gloria Castañeda-Valencia (20758502)

“…The developed bci optimization tool, based on MMFF94, was implemented using a Python code made available at https://github.com/molmodcs/bci_solver. …”

Advancing Solar Magnetic Field Modeling by Carlos António (21257432)

“…<br><br>We developed a significantly faster Python code built upon a functional optimization framework previously proposed and implemented by our team. …”

Data files accompanying our PLoS One publication by Peter Hinow (21810605)

“…The videos were digitized and the positional data were saved in .xlsx or .csv format, respectively. The python codes contain the numerical implementations of our mathematical models.…”

Optimized Bayesian regularization-back propagation neural network using data-driven intrusion detection system in Internet of Things by Ashok Kumar K (21441108)

“…The proposed DIDS-BRBPNN-BBWOA-IoT method is implemented using Python. The performance of the DIDS-BRBPNN-BBWOA-IoT approach is examined using performance metrics like accuracy, precision, recall, f1-score, specificity, error rate; computation time, and ROC. …”

Microscopic Detection and Quantification of Microplastic Particles in Environmental Water Samples by Derek Lam (11944213)

“…Image processing algorithms, implemented in Python using adaptive thresholding techniques, were applied to segment particles from the background. …”

Landscape Change Monitoring System (LCMS) Conterminous United States Cause of Change (Image Service) by U.S. Forest Service (17476914)

“…Detecting trends in forest disturbance and recovery using yearly Landsat time series: 2. TimeSync - Tools for calibration and validation. …”

Data Sheet 1_COCαDA - a fast and scalable algorithm for interatomic contact detection in proteins using Cα distance matrices.pdf by Rafael Pereira Lemos (9104911)

“…COCαDA demonstrated superior performance compared to the other methods, achieving on average 6x faster computation times than advanced data structures like k-d trees from NS, in addition to being simpler to implement and fully customizable. …”

Supplementary Data: Biodiversity and Energy System Planning - Queensland 2025 by Andrew Rogers (17623239)

“…</p><h2>Software and Spatial Resolution</h2><p dir="ltr">The VRE siting model is implemented using Python and relies heavily on ArcGIS for comprehensive spatial data handling and analysis.…”

<b>Altered cognitive processes shape tactile perception in autism.</b> (data) by Ourania Semelidou (19178362)

“…</p><p dir="ltr">The perceptual decision-making data were collected from 5 different cohorts of mice at different time-points during their active phase of the day. …”

Core data by Baoqiang Chen (21099509)

“…</p><p><br></p><p dir="ltr">For the 5′ UTR library, we developed a Python script to extract sequences and Unique Molecular Identifiers (UMIs) from the FASTQ files. …”