PYTHON حسب Kan Jia (21666161)

Boundary-value problems and solutions for the examined numerical models. حسب Xuzhen He (14676114)

الموضوعات:

Five Operator Lattice Simulation حسب James McDaniel (22522571)

"…<p dir="ltr">This dataset contains the Python simulation code and supporting documentation for the paper <i>A Five-Operator Lattice of Consciousness: A Logical Framework for Mediation Between Implicit and Explicit Processing</i> (McDaniel, 2025).…"

Overview of MicNet toolbox. حسب Natalia Favila (12936672)

Optimal implementation of matrix operations on the CPU platform (double precision; solid black line = benchmarked bandwidth; lines + symbols = effective bandwidth; black = COPY2D;... حسب Xuzhen He (14676114)

الموضوعات:

Model for the maximal effective bandwidth of numerical models (lines = model prediction by Eq 12; symbols = measured maximal effective bandwidth; filled = f64; hollow = f32; black... حسب Xuzhen He (14676114)

الموضوعات:

The format of the electrode csv file حسب Joseph James Tharayil (21416715)

"…To enable efficient calculation of extracellular signals from large neural network simulations, we have developed <i>BlueRecording</i>, a pipeline consisting of standalone Python code, along with extensions to the Neurodamus simulation control application, the CoreNEURON computation engine, and the SONATA data format, to permit online calculation of such signals. …"

The format of the simulation reports حسب Joseph James Tharayil (21416715)

"…To enable efficient calculation of extracellular signals from large neural network simulations, we have developed <i>BlueRecording</i>, a pipeline consisting of standalone Python code, along with extensions to the Neurodamus simulation control application, the CoreNEURON computation engine, and the SONATA data format, to permit online calculation of such signals. …"

Comparison of BlueRecording with existing tools حسب Joseph James Tharayil (21416715)

"…To enable efficient calculation of extracellular signals from large neural network simulations, we have developed <i>BlueRecording</i>, a pipeline consisting of standalone Python code, along with extensions to the Neurodamus simulation control application, the CoreNEURON computation engine, and the SONATA data format, to permit online calculation of such signals. …"

The format of the weights file حسب Joseph James Tharayil (21416715)

"…To enable efficient calculation of extracellular signals from large neural network simulations, we have developed <i>BlueRecording</i>, a pipeline consisting of standalone Python code, along with extensions to the Neurodamus simulation control application, the CoreNEURON computation engine, and the SONATA data format, to permit online calculation of such signals. …"

AiZynthTrain: Robust, Reproducible, and Extensible Pipelines for Training Synthesis Prediction Models حسب Samuel Genheden (1273512)

"…We introduce the AiZynthTrain Python package for training synthesis models in a robust, reproducible, and extensible way. …"

Diagram of data analysis and implementation of the package BOOME. حسب Li-Pang Chen (9747423)

Iterative gap-filling strategy used to generate ensembles implemented in Medusa. حسب Gregory L. Medlock (4280971)

Overview of MCell4 architecture. حسب Adam Husar (18437351)

"…<p>MCell4 is comprised of four main components: 1) The PyMCell library provides a Python interface and contains classes to hold the model representation, 2) The MCell4 engine implements the simulation algorithms, 3) The BNG (BioNetGen) library provides methods to resolve BioNetGen reactions, and 4) The MDL (Model Description Language) parser enables backward compatibility with MCell3.…"

Overview of MCell4 Scheduler. حسب Adam Husar (18437351)

Example of graph transformation with BNG reaction rules. حسب Adam Husar (18437351)

Left schematic of the XOR gate implementation [11]. حسب Fabricio Cravo (21387854)

Examples of Tissue Forge modeling features. حسب T. J. Sego (9904909)

A high-performance and highly reusable fast multipole method library and its application to solvation energy calculations at virus-scale حسب Tingyu Wang (12342757)

"…It empowers researchers to compute solvation energy at the scale of viruses interactively via easy-to-use Python interfaces. The 1/N convergence rate observed in mesh-refinement studies confirms code correctness, and result comparison with other trusted PB software shows agreement using a wide range of proteins.Performance results report timings and breakdowns with between 8,000 and 2 million boundary elements and confirm the linear complexity in both time and space. …"

Non-exhaustive overview of the functionality offered by the different toolboxes currently supporting the PEtab format. حسب Leonard Schmiester (8327379)