Demonstration of Isosteric Heat of Adsorption Calculation using AIFs and pyGAPs by Jack Evans (11275386)

“…</p><p dir="ltr">The calculation is performed using the Clausius-Clapeyron method as implemented in the <code><strong>pyGAPS</strong></code> Python library for adsorption science. …”

Dataset for: Phylotranscriptomics reveals the phylogeny of Asparagales and the evolution of allium flavor biosynthesis, Nature Communications，DOI：10.1038/s41467-024-53943-6 by Xiao-Xiao Wang (2447920)

“…Filter adapters and low-quality bases using fastp (https://github.com/OpenGene/fastp).…”

Elements: Streaming Molecular Dynamics Simulation Trajectories for Direct Analysis – Applications to Sub-Picosecond Dynamics in Microsecond Simulations by Matthias Heyden (17087794)

“…This eliminates the need for intermediate storage and allows immediate access to high-frequency fluctuations and vibrational signatures that would otherwise be inaccessible. We have implemented this streaming interface in the MD engines NAMD, LAMMPS, and GROMACS</p><p dir="ltr">On the client side, we developed the IMDClient Python package which receives the streamed data, stores into a custom buffer, and provides it to external tools as NumPy arrays, facilitating integration with scientific computing workflows. …”

Hippocampal and cortical activity reflect early hyperexcitability in an Alzheimer's mouse model by Marina Diachenko (19739092)

“…</p><p dir="ltr">All data are available upon request. The standalone Python implementation of the fE/I algorithm is available under a CC-BY-NC-SA license at <a href="https://github.com/arthur-ervin/crosci" target="_blank">https://github.com/arthur-ervin/crosci</a>. …”

Executable Books in Robotics by Murilo Marinho (21508857)

“…In this work, to showcase the results of the Open Research Fellowship 24-25 in the field of Robotics, I show one way to help bridge the theory-practice gap creating a fully open CC BY-NC-SA 4.0 licensed executable textbook in Python, based on Jupyter notebooks. The textbook features, initially, five basic lessons that are currently used in the Robotics Manipulator PGT unit. …”

Iterative Methods for Vecchia-Laplace Approximations for Latent Gaussian Process Models by Pascal Kündig (19824557)

“…All methods are implemented in a free C++ software library with high-level Python and R packages. …”

Keyhole Imagery Global Coverage Dataset (1960–1984) by Hao Li (20223762)

“…</li><li><b>Code</b>: Python scripts implementing the three-step workflow (imagery classification, global grid generation, and point-based property calculation).…”

Collaborative Research: Framework: Improving the Understanding and Representation of Atmospheric Gravity Waves using High-Resolution Observations and Machine Learning by Joan Alexander (17047170)

“…Establishing a framework for implementing and testing ML-based parameterizations in atmospheric models. …”

ReaxANA: Analysis of Reactive Dynamics Trajectories for Reaction Network Generation by Hong Zhu (109912)

“…This algorithm is implemented in ReaxANA, a parallel Python package designed to extract reaction mechanisms from both heterogeneous and homogeneous reactive MD trajectories. …”

ReaxANA: Analysis of Reactive Dynamics Trajectories for Reaction Network Generation by Hong Zhu (109912)

“…This algorithm is implemented in ReaxANA, a parallel Python package designed to extract reaction mechanisms from both heterogeneous and homogeneous reactive MD trajectories. …”

Data Sheet 1_COCαDA - a fast and scalable algorithm for interatomic contact detection in proteins using Cα distance matrices.pdf by Rafael Pereira Lemos (9104911)

“…Here, we introduce COCαDA (COntact search pruning by Cα Distance Analysis), a Python-based command-line tool for improving search pruning in large-scale interatomic protein contact analysis using alpha-carbon (Cα) distance matrices. …”

MSc Personalised Medicine at Ulster University by Steven Watterson (100045)

“…</b> This module introduces the techniques needed to be able to work with high dimensional data (big data) and the mathematics that underpins the fundamental data science. Coding in Python, we learn how to analyse data and explore machine learning/AI based analysis</p><p dir="ltr">· <b>MPM708: Research Project (60 credits).…”

Microscopic Detection and Quantification of Microplastic Particles in Environmental Water Samples by Derek Lam (11944213)

“…Image processing algorithms, implemented in Python using adaptive thresholding techniques, were applied to segment particles from the background. …”

Image 1_Differential diagnosis of pneumoconiosis mass shadows and peripheral lung cancer using CT radiomics and the AdaBoost machine learning model.tif by Xiaobing Li (291454)

“…LR, SVM, and AdaBoost algorithms were implemented using Python to build the models. In the training set, the accuracies of the LR, SVM, and AdaBoost models were 79.4, 84.0, and 80.9%, respectively; the sensitivities were 74.1, 74.1, and 81.0%, respectively; the specificities were 83.6, 91.8, and 80.8%, respectively; and the AUC values were 0.837, 0.886, and 0.900, respectively. …”

Image 2_Differential diagnosis of pneumoconiosis mass shadows and peripheral lung cancer using CT radiomics and the AdaBoost machine learning model.tif by Xiaobing Li (291454)

“…LR, SVM, and AdaBoost algorithms were implemented using Python to build the models. In the training set, the accuracies of the LR, SVM, and AdaBoost models were 79.4, 84.0, and 80.9%, respectively; the sensitivities were 74.1, 74.1, and 81.0%, respectively; the specificities were 83.6, 91.8, and 80.8%, respectively; and the AUC values were 0.837, 0.886, and 0.900, respectively. …”

Research Database by Ana Paula Fermiano (22439479)

“…Data were processed using <b>Python-based automation scripts</b> for scraping, cleaning, geocoding, and calculating geodesic distances between each property and the nearest community garden. …”

Code and data for reproducing the results in the original paper of DML-Geo by Pengfei CHEN (8059976)

“…</p><p dir="ltr"><b>rslt.pkl</b>: A pickled Python object that stores the explainer based on geoshapley for dataset 1.…”

Mapping Policy Coherence in National UK Food Systems (2008– 2024): Analysing the Integration of Climate Change Mitigation and Adaptation Strategies, LEAP 2025 conference, Oxford by Ronja Teschner (20974180)

“…Van Rossum, G.; Drake, F. L. Python 3 Reference Manual, 2009.</p></td></tr></table><p></p>…”

<b>Altered cognitive processes shape tactile perception in autism.</b> (data) by Ourania Semelidou (19178362)

“…The perceptual decision-making setup was controlled by Bpod (Sanworks) through scripts in Python (PyBpod, https://pybpod.readthedocs.io/en/latest/). …”

Code by Baoqiang Chen (21099509)

“…</p><p><br></p><p dir="ltr">For the 5′ UTR library, we developed a Python script to extract sequences and Unique Molecular Identifiers (UMIs) from the FASTQ files. …”