BlueRecording simulates hippocampal LFP. by Joseph James Tharayil (21416715)

The format of the electrode csv file by Joseph James Tharayil (21416715)

“…To enable efficient calculation of extracellular signals from large neural network simulations, we have developed <i>BlueRecording</i>, a pipeline consisting of standalone Python code, along with extensions to the Neurodamus simulation control application, the CoreNEURON computation engine, and the SONATA data format, to permit online calculation of such signals. …”

The format of the simulation reports by Joseph James Tharayil (21416715)

“…To enable efficient calculation of extracellular signals from large neural network simulations, we have developed <i>BlueRecording</i>, a pipeline consisting of standalone Python code, along with extensions to the Neurodamus simulation control application, the CoreNEURON computation engine, and the SONATA data format, to permit online calculation of such signals. …”

Comparison of BlueRecording with existing tools by Joseph James Tharayil (21416715)

“…To enable efficient calculation of extracellular signals from large neural network simulations, we have developed <i>BlueRecording</i>, a pipeline consisting of standalone Python code, along with extensions to the Neurodamus simulation control application, the CoreNEURON computation engine, and the SONATA data format, to permit online calculation of such signals. …”

The format of the weights file by Joseph James Tharayil (21416715)

“…To enable efficient calculation of extracellular signals from large neural network simulations, we have developed <i>BlueRecording</i>, a pipeline consisting of standalone Python code, along with extensions to the Neurodamus simulation control application, the CoreNEURON computation engine, and the SONATA data format, to permit online calculation of such signals. …”

Supporting data for "Interpreting complex ecological patterns and processes across differentscales using Artificial Intelligence" by Yifei Gu (9507104)

“…</p><p dir="ltr">Firstly, a Python package HSC3D, was developed to quantify habitat structural complexity (HSC) at the community level. …”

Reaction Alignment of the Tricarboxylic Acid (TCA) Cycle Network. by Adel Heydarabadipour (22290905)

Workflow of segmentation model creation and application. by Vincent Hickl (16947429)

Methodological Approach Based on Structural Parameters, Vibrational Frequencies, and MMFF94 Bond Charge Increments for Platinum-Based Compounds by Gloria Castañeda-Valencia (20758502)

“…The developed bci optimization tool, based on MMFF94, was implemented using a Python code made available at https://github.com/molmodcs/bci_solver. …”

BaNDyT: Bayesian Network Modeling of Molecular Dynamics Trajectories by Elizaveta Mukhaleva (20602550)

“…Concurrently, our ability to perform long-time scale molecular dynamics (MD) simulations on proteins and other materials has increased exponentially. …”

BaNDyT: Bayesian Network Modeling of Molecular Dynamics Trajectories by Elizaveta Mukhaleva (20602550)

“…Concurrently, our ability to perform long-time scale molecular dynamics (MD) simulations on proteins and other materials has increased exponentially. …”

BaNDyT: Bayesian Network Modeling of Molecular Dynamics Trajectories by Elizaveta Mukhaleva (20602550)

“…Concurrently, our ability to perform long-time scale molecular dynamics (MD) simulations on proteins and other materials has increased exponentially. …”

Overview of deep learning terminology. by Aaron E. Maxwell (8840882)

“…Training loops are implemented with the luz package. The geodl package provides utility functions for creating raster masks or labels from vector-based geospatial data and image chips and associated masks from larger files and extents. …”

Neural-Signal Tokenization and Real-Time Contextual Foundation Modelling for Sovereign-Scale AGI Systems by Lakshit Mathur (20894549)

“…The work advances national AI autonomy, real-time cognitive context modeling, and ethical human-AI integration.…”

Data for Lab-based X-ray CT phase retrieval by Emil Visby Kristensen (12508171)

“…Python based implementation of phase retieival algoritms available at: <a href="https://gitlab.gbar.dtu.dk/emilv1/labphase" target="_blank">emilv / LabPhase · GitLab</a>. …”

Extending the pyAFQ software. by John Kruper (18809386)

A Structured Attempt at a Polynomial-Time Solution to the Subset Sum Problem and Its Implications for P vs NP by MInakshi Aggarwal (21677633)

“…The manuscript includes theoretical formulation, Python implementation, verified output snapshots, and detailed analysis — aimed at opening fresh discourse on the P vs NP question. …”

Spherical Texture method design. by Oane Gros (20636735)

“…<b>H)</b> The <i>Spherical Texture</i> extraction is implemented as a Python package and it is directly available in <i>ilastik</i>, allowing for its adoption into the Object Classification workflow. …”

Efficient, Hierarchical, and Object-Oriented Electronic Structure Interfaces for Direct Nonadiabatic Dynamics Simulations by Sascha Mausenberger (22225772)

“…We present a novel, flexible framework for electronic structure interfaces designed for nonadiabatic dynamics simulations, implemented in Python 3 using concepts of object-oriented programming. …”

The codes and data for "Lane Extraction from Trajectories at Road Intersections Based on Graph Transformer Network" by Chongshan Wan (19247614)

“…</li></ul><h2>Codes</h2><p dir="ltr">This repository contains the following Python codes：</p><ul><li>`data_processing.py`: Contains the implementation of data processing and feature extraction. …”