ReaxANA: Analysis of Reactive Dynamics Trajectories for Reaction Network Generation by Hong Zhu (109912)

“…To address this challenge, we introduce a graph algorithm-based explicit denoising approach that defines user-controlled operations for removing oscillatory reaction patterns, including combination and separation, isomerization, and node contraction. This algorithm is implemented in ReaxANA, a parallel Python package designed to extract reaction mechanisms from both heterogeneous and homogeneous reactive MD trajectories. …”

Cathode carbon block material parameters [14]. by Chenglong Gong (20629836)

“…A random aggregate model was implemented in Python and imported into finite element software to simulate sodium diffusion using Fick’s second law. …”

Sodium concentration distribution cloud map. by Chenglong Gong (20629836)

“…A random aggregate model was implemented in Python and imported into finite element software to simulate sodium diffusion using Fick’s second law. …”

Sodium binding coefficient R. by Chenglong Gong (20629836)

“…A random aggregate model was implemented in Python and imported into finite element software to simulate sodium diffusion using Fick’s second law. …”

Supplementary Data: Biodiversity and Energy System Planning - Queensland 2025 by Andrew Rogers (17623239)

“…</p><h2>Software and Spatial Resolution</h2><p dir="ltr">The VRE siting model is implemented using Python and relies heavily on ArcGIS for comprehensive spatial data handling and analysis.…”

Globus Compute: Federated FaaS for Integrated Research Solutions by eRNZ Admin (6438486)

“…</p><p dir="ltr">Globus Compute [2] is a Function-as-a-Service platform designed to provide a scalable, secure, and simple interface to HPC resources. Globus Compute implements a federated model via which users may deploy endpoints on arbitrary remote computers, from the edge to high performance computing (HPC) cluster, and they may then invoke Python functions on those endpoints via a reliable cloud-hosted service. …”

PYSEQM 2.0: Accelerated Semiempirical Excited-State Calculations on Graphical Processing Units by Vishikh Athavale (12623809)

“…PYSEQM is a Python-based package designed for efficient and scalable quantum chemical simulations. …”

Data Sheet 1_COCαDA - a fast and scalable algorithm for interatomic contact detection in proteins using Cα distance matrices.pdf by Rafael Pereira Lemos (9104911)

“…COCαDA demonstrated superior performance compared to the other methods, achieving on average 6x faster computation times than advanced data structures like k-d trees from NS, in addition to being simpler to implement and fully customizable. …”

Microscopic Detection and Quantification of Microplastic Particles in Environmental Water Samples by Derek Lam (11944213)

“…Image processing algorithms, implemented in Python using adaptive thresholding techniques, were applied to segment particles from the background. …”

Fast, FAIR, and Scalable: Managing Big Data in HPC with Zarr by Alfonso Ladino (21447002)

“…</p><p dir="ltr">In this work, we apply the scientific datacube model to the transformation of large-scale radar datasets from Colombia and the U.S. (NEXRAD), using open-source tools from the Python ecosystem such as Xarray, Xradar, and Dask to enable efficient parallel processing and scalable analysis. …”

Copy number contingency table. by Yang Wu (66682)

“…Our methods are implemented in Python and are freely available from GitHub (<a href="https://github.com/queryang/PASO" target="_blank">https://github.com/queryang/PASO</a>).…”

Gene mutation contingency table. by Yang Wu (66682)

“…Our methods are implemented in Python and are freely available from GitHub (<a href="https://github.com/queryang/PASO" target="_blank">https://github.com/queryang/PASO</a>).…”

Resistant & sensitive cell line Info on AZD5991. by Yang Wu (66682)

“…Our methods are implemented in Python and are freely available from GitHub (<a href="https://github.com/queryang/PASO" target="_blank">https://github.com/queryang/PASO</a>).…”

Resistant & sensitive drug info on COLO800. by Yang Wu (66682)

“…Our methods are implemented in Python and are freely available from GitHub (<a href="https://github.com/queryang/PASO" target="_blank">https://github.com/queryang/PASO</a>).…”

Research Database by Ana Paula Fermiano (22439479)

“…</p><p dir="ltr">A dataset of <b>1,157 georeferenced residential properties</b> was compiled from online real estate platforms and municipal GIS records. …”

Image 1_Differential diagnosis of pneumoconiosis mass shadows and peripheral lung cancer using CT radiomics and the AdaBoost machine learning model.tif by Xiaobing Li (291454)

“…LR, SVM, and AdaBoost algorithms were implemented using Python to build the models. In the training set, the accuracies of the LR, SVM, and AdaBoost models were 79.4, 84.0, and 80.9%, respectively; the sensitivities were 74.1, 74.1, and 81.0%, respectively; the specificities were 83.6, 91.8, and 80.8%, respectively; and the AUC values were 0.837, 0.886, and 0.900, respectively. …”

Image 2_Differential diagnosis of pneumoconiosis mass shadows and peripheral lung cancer using CT radiomics and the AdaBoost machine learning model.tif by Xiaobing Li (291454)

“…LR, SVM, and AdaBoost algorithms were implemented using Python to build the models. In the training set, the accuracies of the LR, SVM, and AdaBoost models were 79.4, 84.0, and 80.9%, respectively; the sensitivities were 74.1, 74.1, and 81.0%, respectively; the specificities were 83.6, 91.8, and 80.8%, respectively; and the AUC values were 0.837, 0.886, and 0.900, respectively. …”

Optimized Bayesian regularization-back propagation neural network using data-driven intrusion detection system in Internet of Things by Ashok Kumar K (21441108)

“…The proposed DIDS-BRBPNN-BBWOA-IoT method is implemented using Python. The performance of the DIDS-BRBPNN-BBWOA-IoT approach is examined using performance metrics like accuracy, precision, recall, f1-score, specificity, error rate; computation time, and ROC. …”

SpatialKNifeY analysis landscape. by Shunsuke A. Sakai (13789939)

“…(B) Implementation of SpatialKNifeY (SKNY). A Python library of SKNY depends on stlearn [<a href="http://www.ploscompbiol.org/article/info:doi/10.1371/journal.pcbi.1012854#pcbi.1012854.ref023" target="_blank">23</a>] and scanpy [<a href="http://www.ploscompbiol.org/article/info:doi/10.1371/journal.pcbi.1012854#pcbi.1012854.ref009" target="_blank">9</a>] functions (see “Methods”) and AnnData object programming [<a href="http://www.ploscompbiol.org/article/info:doi/10.1371/journal.pcbi.1012854#pcbi.1012854.ref010" target="_blank">10</a>]. …”

OHID-FF dataset for forest fire detection and classification by xin chen (20496938)

“…</p><p dir="ltr">- For binary classification experiments with the included scripts:</p><p dir="ltr">```bash</p><p dir="ltr">python "train val scripts/main.py"</p><p>```</p><p dir="ltr"><br></p><p dir="ltr">Results and logs from training runs are saved under `results/` (see the scripts folder README for details).…”