Performance metrics for all three trained gradient boosting models with different input vectors and for their combined weighted mean prediction. حسب Alexander Kroll (9304225)

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ProSmith outperforms previous models in the prediction of Michaelis constants <i>K</i>_M especially for enzymes not highly similar to proteins in the training set. حسب Alexander Kroll (9304225)

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Performance metrics for ProSmith and ESP for the prediction of enzyme-substrate pairs. حسب Alexander Kroll (9304225)

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Source Code for the Hierarchical Key Assignment Scheme (HKAS) حسب Baris Celiktas (22804778)

Tools used in implementing the RNN models. حسب Fahmi H. Quradaa (17896527)

الموضوعات:

For accurate DTA predictions, ProSmith requires training on identical drugs but not on similar proteins. حسب Alexander Kroll (9304225)

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Enzyme-substrate pair predictions improve with increasing substrate similarity compared to training substrates. حسب Alexander Kroll (9304225)

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Python code that implements the Hoshen Kopleman algorithm used to identify the clusters shown in Figs 9 and 10. حسب Leonardo Costa Ribeiro (10439243)

"…<p>Python code that implements the Hoshen Kopleman algorithm used to identify the clusters shown in Figs <a href="http://www.plosone.org/article/info:doi/10.1371/journal.pone.0285630#pone.0285630.g009" target="_blank">9</a> and <a href="http://www.plosone.org/article/info:doi/10.1371/journal.pone.0285630#pone.0285630.g010" target="_blank">10</a>.…"

Performance metrics for ProSmith and previously published methods for DTA prediction for different splitting scenarios. حسب Alexander Kroll (9304225)

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Drug-target affinity predictions improve with increasing drug similarity score compared to the training drugs. حسب Alexander Kroll (9304225)

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Secure Python Code Manager: A Tool for Protected Python Code Distribution and Management حسب Pavel Izosimov (20096259)

"…</li><li><b>Commercial Distribution</b>: Safely share Python code with clients or customers, implementing advanced <b>Python code protection tools</b> for sales or rentals.…"

Performance metrics for ProSmith and previously published methods for DTA prediction on the random split of the Davis dataset. حسب Alexander Kroll (9304225)

الموضوعات:

BOFdat: Generating biomass objective functions for genome-scale metabolic models from experimental data حسب Jean-Christophe Lachance (6619307)

الموضوعات:

Coefficient of determination <i>R</i>² of ProSmith for different splitting scenarios of the Davis dataset. حسب Alexander Kroll (9304225)

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We divided the ESP test set into subsets according to the number of positive data points with the same small molecule in the training set. حسب Alexander Kroll (9304225)

الموضوعات:

We divided the ESP test set into subsets according to the maximal sequence identity of an enzyme compared to all training enzymes. حسب Alexander Kroll (9304225)

الموضوعات:

Performance metrics of ProSmith and previously published methods for the prediction of Michaelis constants <i>K</i>_M. حسب Alexander Kroll (9304225)

الموضوعات:

Hyperparameters of the ProSmith Transformer Network. حسب Alexander Kroll (9304225)

الموضوعات:

Python Script for the QSAR Model Building. حسب Md. Al-Amin (6270104)

Analysis of the selected studies in terms of tools used for implementing RNN models. حسب Fahmi H. Quradaa (17896527)

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