Numerical analysis and modeling of water quality indicators in the Ribeirão João Leite reservoir (Goiás, Brazil) حسب Amanda Bueno de Moraes (22559249)

"…The code implements a statistical–computational workflow for parameter selection (VIF, Bartlett and KMO tests, PCA and FA with <i>varimax</i>) and then trains and evaluates machine-learning models to predict three key physico-chemical indicators: turbidity, true color, and total iron. …"

Data from: Circadian activity predicts breeding phenology in the Asian burying beetle <i>Nicrophorus nepalensis</i> حسب Hao Chen (20313552)

"…</p><p dir="ltr">The dataset includes:</p><ol><li>Raw locomotor activity measurements (.txt files) with 1-minute resolution</li><li>Breeding experiment data (Pair_breeding.csv) documenting nest IDs, population sources, photoperiod treatments, and breeding success</li><li>Activity measurement metadata (Loc_metadataset.csv) containing detailed experimental parameters and daily activity metrics extracted using tsfresh</li></ol><p dir="ltr">The repository also includes complete analysis pipelines implemented in both Python (3.8.8) and R (4.3.1), featuring:</p><ul><li>Data preprocessing and machine learning model development</li><li>Statistical analyses</li><li>Visualization scripts for generating Shapley plots, activity pattern plots, and other figures</li></ul><p></p>…"

Void-Center Galaxies and the Gravity of Probability Framework: Pre-DESI Consistency with VGS 12 and NGC 6789 حسب Jordan Waters (21620558)

"…<br><br><br><b>ORCID ID: https://orcid.org/0009-0009-0793-8089</b><br></p><p dir="ltr"><b>Code Availability:</b></p><p dir="ltr"><b>All Python tools used for GoP simulations and predictions are available at:</b></p><p dir="ltr"><b>https://github.com/Jwaters290/GoP-Probabilistic-Curvature</b><br><br>The Gravity of Probability framework is implemented in this public Python codebase that reproduces all published GoP predictions from preexisting DESI data, using a single fixed set of global parameters. …"

Genomic Surveillance of Pemivibart (VYD2311) Escape-Associated Mutations in SARS-CoV-2: December 2025 BioSamples (n=2) حسب Tahir Bhatti (20961974)

"…Full source code and version details are available upon request.…"

Hippocampal and cortical activity reflect early hyperexcitability in an Alzheimer's mouse model حسب Marina Diachenko (19739092)

"…</p><p dir="ltr">All data are available upon request. The standalone Python implementation of the fE/I algorithm is available under a CC-BY-NC-SA license at <a href="https://github.com/arthur-ervin/crosci" target="_blank">https://github.com/arthur-ervin/crosci</a>. …"

Improving the calibration of an integrated CA-What If? digital planning framework حسب CA What If? (21381170)

"…planning support system (PSS) sub-model to generate and analyse three representative built-up development scenarios. …"

Datasets from the Programmatic Analysis of Fuel Treatments: from the landscape to the national level Joint Fire Science Project (14-5-01-1) حسب Douglas B. Rideout (19657906)

"…Included for each study site are individual rasters representing the fire affected resources for that study site. …"

Ambient Air Pollutant Dynamics (2010–2025) and the Exceptional Winter 2016–17 Pollution Episode: Implications for a Uranium/Arsenic Exposure Event حسب Thomas Clemens Carmine (19756929)

"…Includes imputation statistics, data dictionary, and the Python imputation code (Imputation_Air_Pollutants_NABEL.py). …"

<b>Data and Code from 'The Perfect and Legitimate Bribe': A Transparent Record of Human-AI Collaboration in Legal Scholarship</b> حسب Joshua Stern (21748181)

"…</p><p dir="ltr">For optimal viewing of `collated-anonymized.txt`, a text editor that can handle long lines without word wrapping is recommended to preserve the indentation that represents the conversational branching structure.</p><p><br></p><p dir="ltr">### **Running Code/Software**</p><p dir="ltr">The provided scripts (`collator-ipynb.txt` and `sentence-ancestry-ipynb.txt`) are Jupyter Notebooks and require a Python 3 environment to run. …"

End-to-end example-based sim-to-real RL policy transfer based on neural stylisation with application to robotic cutting حسب Jamie Hathaway (10285367)

"…</p><h3>policy/</h3><p dir="ltr">This folder contains pickled trajectories, in the form of a Python list.</p><p dir="ltr">The list's elements are TrajWithRew dataclass objects from the Imitation Python library (https://imitation.readthedocs.io/en/latest/)</p><p dir="ltr">TrajWithRew contains 4 main fields</p><ul><li> obs - the (unnormalised) observations, in the form of a [WINDOW_LENGTH * NUM_CHANNELS] array</li><li> acts - the actions in the form of a [WINDOW_LENGTH - 1 * NUM_ACTS] array</li><li> infos - the info values at each timestep, as a [WINDOW_LENGTH - 1] array of dicts</li><li> terminals - boolean indicating if that trajectory segment is a terminal segment</li><li> rews - the rewards as a [WINDOW_LENGTH - 1] array</li></ul><p dir="ltr">Each TrajWithRew represents not a full episodic trajectory, as is usually the case with Imitiation - rather they represent segments of a full episodic trajectory, of length WINDOW_LENGTH. …"

Hierarchical Deep Learning Framework for Automated Marine Vegetation and Fauna Analysis Using ROV Video Data حسب Bjørn Christian Weinbach (16918707)

"…</p><ol><li><b>MaskRCNN-Segmented Objects</b>:</li></ol><p dir="ltr"> - `.jpg` files representing segmented objects detected by the MaskRCNN model.…"

Supplementary Material for: The prediction of hematoma growth in acute intracerebral hemorrhage: from 2-dimensional shape to 3-dimensional morphology حسب figshare admin karger (2628495)

"…We subsequently constructed the 3-dimensional morphology models, including the probability of hematoma morphology (PHM) and the probability of comprehensive model (PCM), to predict HG. …"

Methodological Approach Based on Structural Parameters, Vibrational Frequencies, and MMFF94 Bond Charge Increments for Platinum-Based Compounds حسب Gloria Castañeda-Valencia (20758502)

"…The developed bci optimization tool, based on MMFF94, was implemented using a Python code made available at https://github.com/molmodcs/bci_solver. …"

Audio Datasets of belt conveyor rollers in mines حسب Juan Liu (19687435)

"…Combined with machine learning models, this dataset can be used for real-time diagnosis of roller operational states. …"

Predictive Analysis of Mushroom Toxicity Based Exclusively on Their Natural Habitat. حسب Enrico Bertozzi (22461709)

"…Analysis of the confusion matrix revealed a critical limitation: although the model correctly identified 785 poisonous mushrooms, it misclassified 313 as edible (false negatives), which represents an unacceptable risk in a practical application.…"

Machine Learning-Driven Discovery and Database of Cyanobacteria Bioactive Compounds: A Resource for Therapeutics and Bioremediation حسب Renato Soares (20348202)

"…The biochemical descriptors were then used to determine the most promising protein targets for human therapeutic approaches and environmental bioremediation using the best machine learning (ML) model. The creation of our database, coupled with the integration of computational docking protocols, represents an innovative approach to understanding the potential of cyanobacteria bioactive compounds. …"

Data files accompanying our PLoS One publication حسب Peter Hinow (21810605)

"…The videos were digitized and the positional data were saved in .xlsx or .csv format, respectively. The python codes contain the numerical implementations of our mathematical models.…"

Bacterial persistence modulates the speed, magnitude and onset of antibiotic resistance evolution حسب Giorgio Boccarella (22810952)

"…</p><p dir="ltr">Repository structure</p><p dir="ltr">Fig_1/</p><ul><li>Probability of emergence analysis</li><li>Fig_1.py: contour plot generation</li></ul><p dir="ltr">Fig_2/</p><ul><li>MIC evolution simulations</li><li>Fig_2_a/: R-based simulation analysis</li><li>Fig_2_b/: Python visualization</li><li>Fig_2_c/: speed of resistance evolution analysis</li><li>Fig_2_d/: time to resistance analysis</li></ul><p dir="ltr">Fig_3/</p><ul><li>Distribution analysis</li><li>Fig_3_a-b.R: density plots and bar charts (empirical and simulated)</li></ul><p dir="ltr">Fig_4/</p><ul><li>Mutation analysis</li><li>Fig_4_a-b/: mutation counting analysis</li><li><ul><li>Fig_4_a/: simulation data (sim)</li><li>Fig_4_b/: empirical data (emp)</li></ul></li><li>Fig_4_c/: gene ontology and functional analysis</li></ul><p dir="ltr">Fig_5/</p><ul><li>Large-scale evolutionary simulations</li><li>Fig_5_a-b/: heatmap visualizations</li><li>Fig_5_c/: MIC and extinction analysis (empirical)</li></ul><p dir="ltr">Fig_6/</p><ul><li>Population size effects</li><li>Fig_6.py: population size analysis simulations</li></ul><p dir="ltr">S1_figure/</p><ul><li>Supplementary experimental data</li></ul><p dir="ltr">S2_figure/</p><ul><li>Supplementary frequency analysis</li></ul><p dir="ltr">S3_figure/</p><ul><li>Supplementary probability analysis</li></ul><p dir="ltr">scripts_simulations_cluster/</p><ul><li>Large-scale, cluster-optimized simulations</li></ul><p dir="ltr">complete_data/</p><ul><li>Reference to the full data sheet (full data set deposited elsewhere)</li></ul><p dir="ltr">Script types and languages</p><p dir="ltr">Python scripts (.py)</p><ul><li>Mathematical modeling: survival functions, probability calculations</li><li>Stochastic simulations: tau-leaping population dynamics</li><li>Data processing: mutation analysis, frequency calculations</li><li>Visualization: plotting with matplotlib and seaborn</li><li>Typical dependencies: numpy, pandas, matplotlib, seaborn, scipy</li></ul><p dir="ltr">R scripts (.R)</p><ul><li>Statistical analysis: distribution fitting, density plots</li><li>Advanced visualization: publication-quality figures (ggplot2)</li><li>Data manipulation: dplyr / tidyr workflows</li><li>Typical dependencies: dplyr, tidyr, ggplot2, readxl, cowplot</li></ul><p dir="ltr">Data requirements</p><p dir="ltr">The scripts are designed to run using the complete_data.xlsx file and, where relevant, the raw simulation outputs and empirical data sets as described above. …"

Social media images of China's terraces حسب Song Chen (19488280)

"…Geo-tagged images were collected using Weibo cookies and Python-based scraping tools (available at: https://github.com/dataabc/weibo-search). …"

Code and parameter package for long-term mapping and object-based typing of freeze–thaw colluvial deposits (1990–2024) along the Yunnan–Tibet corridor حسب Hui Ye (22308559)

"…Tested with Python 3.x/ArcGIS Pro (ArcPy) and the GEE Code Editor. …"