Numerical analysis and modeling of water quality indicators in the Ribeirão João Leite reservoir (Goiás, Brazil) by Amanda Bueno de Moraes (22559249)

“…The code implements a statistical–computational workflow for parameter selection (VIF, Bartlett and KMO tests, PCA and FA with <i>varimax</i>) and then trains and evaluates machine-learning models to predict three key physico-chemical indicators: turbidity, true color, and total iron. …”

Predicting coding regions on unassembled reads, how hard can it be? - Genome Informatics 2024 by Amanda Clare (98717)

“…Predictions are made on the set of reads, using several prediction tools. The locations and directions of the predictions on the reads are then combined with the information about locations and directions of the reads on the genome using Python code to produce detailed results regarding the correct, incorrect and alternative starts and stops with respect to the genome-level annotation.…”

Data from: Circadian activity predicts breeding phenology in the Asian burying beetle <i>Nicrophorus nepalensis</i> by Hao Chen (20313552)

“…</p><p dir="ltr">The dataset includes:</p><ol><li>Raw locomotor activity measurements (.txt files) with 1-minute resolution</li><li>Breeding experiment data (Pair_breeding.csv) documenting nest IDs, population sources, photoperiod treatments, and breeding success</li><li>Activity measurement metadata (Loc_metadataset.csv) containing detailed experimental parameters and daily activity metrics extracted using tsfresh</li></ol><p dir="ltr">The repository also includes complete analysis pipelines implemented in both Python (3.8.8) and R (4.3.1), featuring:</p><ul><li>Data preprocessing and machine learning model development</li><li>Statistical analyses</li><li>Visualization scripts for generating Shapley plots, activity pattern plots, and other figures</li></ul><p></p>…”

Pteredactyl: Patient Clinical Free-Text Redaction Software by Matt Stammers (14037525)

“…</li><li>This is very much a research tool and should not be relied upon as a catch-all in any production-type capacity. …”

Horuss Research: methodology for validating unstructured data using large language models by Fabiano Castello (6803171)

Hippocampal and cortical activity reflect early hyperexcitability in an Alzheimer's mouse model by Marina Diachenko (19739092)

“…</p><p dir="ltr">All data are available upon request. The standalone Python implementation of the fE/I algorithm is available under a CC-BY-NC-SA license at <a href="https://github.com/arthur-ervin/crosci" target="_blank">https://github.com/arthur-ervin/crosci</a>. …”

Global blue carbon losses from salt marshes exceed restoration gains by Yuhan Zheng (21610220)

“…</h4><h4><b>Additional tools:</b></h4><h4>Land use classification was performed using the <b>Google Earth Engine</b> online platform. …”

Quetzal: Comprehensive Peptide Fragmentation Annotation and Visualization by Eric W. Deutsch (13887)

“…For study conclusions that rely on a small number of peptide-spectrum matches being correct, it is thus important to examine at least some crucial spectra to ensure that they are not one of the incorrect identifications. We present Quetzal, a peptide fragment ion spectrum annotation tool to assist researchers in annotating and examining such spectra to ensure that they correctly support study conclusions. …”

Quetzal: Comprehensive Peptide Fragmentation Annotation and Visualization by Eric W. Deutsch (13887)

“…For study conclusions that rely on a small number of peptide-spectrum matches being correct, it is thus important to examine at least some crucial spectra to ensure that they are not one of the incorrect identifications. We present Quetzal, a peptide fragment ion spectrum annotation tool to assist researchers in annotating and examining such spectra to ensure that they correctly support study conclusions. …”

Ambient Air Pollutant Dynamics (2010–2025) and the Exceptional Winter 2016–17 Pollution Episode: Implications for a Uranium/Arsenic Exposure Event by Thomas Clemens Carmine (19756929)

“…Includes imputation statistics, data dictionary, and the Python imputation code (Imputation_Air_Pollutants_NABEL.py). …”

Folder with all data and algorithms by Jorge Servert Lerdo de Tejada (22290001)

“…Despite its promise, clinical translation remains constrained by competing demands for signal strength and patient safety under laser illumination. In this study, we present an open-source, Python-based computational framework that unifies photon transport modeling, probe geometry optimization, and photothermal safety assessment into a single workflow. …”

Supplementary Data: Biodiversity and Energy System Planning - Queensland 2025 by Andrew Rogers (17623239)

“…</p><h2>Software and Spatial Resolution</h2><p dir="ltr">The VRE siting model is implemented using Python and relies heavily on ArcGIS for comprehensive spatial data handling and analysis.…”

Investigating the advantages and disadvantages of available open-source frameworks for prototyping data-based applications by eRNZ Admin (6438486)

PRION Degradome Foundation Atlas by Axel Petzold (7076261)

“…</p><h4><b>Reproducibility</b></h4><p dir="ltr">All datasets can be regenerated using open-source tools (Python, BLAST, SAS). Fully documented Python scripts are included in the repository to ensure transparency, reproducibility, and adaptability across computational environments, following the methodology described in [1].…”

<b>Alpha-Synuclein Degradome Foundation Atlas</b> by Axel Petzold (7076261)

“…<p dir="ltr">This open-access repository presents the <b>Alpha-Synuclein Degradome Foundation Atlas. …”

Data Sheet 1_Development and feasibility testing of an AI-powered chatbot for early detection of caregiver burden: protocol for a mixed methods feasibility study.docx by Ravi Shankar (103040)

“…BOTANIC, developed using Python and open-source libraries, will integrate with Telegram and utilize advanced NLP techniques to analyze caregiver conversations and detect signs of burden. …”

Data Sheet 2_Development and feasibility testing of an AI-powered chatbot for early detection of caregiver burden: protocol for a mixed methods feasibility study.docx by Ravi Shankar (103040)

“…BOTANIC, developed using Python and open-source libraries, will integrate with Telegram and utilize advanced NLP techniques to analyze caregiver conversations and detect signs of burden. …”

Data Sheet 4_Development and feasibility testing of an AI-powered chatbot for early detection of caregiver burden: protocol for a mixed methods feasibility study.docx by Ravi Shankar (103040)

“…BOTANIC, developed using Python and open-source libraries, will integrate with Telegram and utilize advanced NLP techniques to analyze caregiver conversations and detect signs of burden. …”

Data Sheet 3_Development and feasibility testing of an AI-powered chatbot for early detection of caregiver burden: protocol for a mixed methods feasibility study.docx by Ravi Shankar (103040)

“…BOTANIC, developed using Python and open-source libraries, will integrate with Telegram and utilize advanced NLP techniques to analyze caregiver conversations and detect signs of burden. …”

Advancing Solar Magnetic Field Modeling by Carlos António (21257432)

“…<br><br>We developed a significantly faster Python code built upon a functional optimization framework previously proposed and implemented by our team. …”