Five Operator Lattice Simulation by James McDaniel (22522571)

“…<p dir="ltr">This dataset contains the Python simulation code and supporting documentation for the paper <i>A Five-Operator Lattice of Consciousness: A Logical Framework for Mediation Between Implicit and Explicit Processing</i> (McDaniel, 2025).…”

RealBench: A Repo-Level Code Generation Benchmark Aligned with Real-World Software Development Practices by RealBench RealBench (22275393)

“…<br>│ ├── model_gen/ # Code generation using various LLMs.<br>│ │ ├── generate/ # LLM inference implementations.…”

MMRT general settings. by Pedro C. Martínez-Suárez (21192459)

DeepB3Pred - code by Saleh Musleh (22263718)

A game of life with dormancy - Code by Daniel Henrik Nevermann (20376933)

“…</p><ul><li>To run an animated simulation, use `python simulation.py'.</li><li>The implementation of Spore Life can be found in gol.py.…”

Automation of Bactopia Pipeline for Tracking Antibiotic Resistance from Treated Municipal Wastewater Reuse in a Spinach-Grown Lysimeter System by Connor Lee (22327243)

“…The team developed a Python-based wrapper to automate the Bactopia pipeline, which integrates genome assembly, annotation, and ARG detection tools. …”

Simple implementation examples of agent AI on free energy calculation and phase-field simulation by Toshiyuki Koyama (22828581)

“…</p> <p>Using Gibbs energy calculations and diffusion simulations as examples, we demonstrated the implementation method and usefulness of simple agent AI, where sample python codes are distributed as supplemental materials.…”

Overview of the MD datasets used in S2 Fig. by Guillermo Pérez-Hernández (21156182)

“…<div><p>We present mdciao, an open-source command line tool and Python Application-Programming-Interface (API) for easy, one-shot analysis and representation of molecular dynamics (MD) simulation data. …”

DeepB3Pred_source_code by Muhammad Arif (17012472)

Table 1 - mdciao: Accessible Analysis and Visualization of Molecular Dynamics Simulation Data by Guillermo Pérez-Hernández (21156182)

Testing Code for JcvPCA and JsvCRP. by Océane Dubois (21989812)

“…<p>This file contains the code that implements both metrics in python and apply them on a simulated dataset.…”

Expanding Access to Advanced Scientific Workflows: The NSF Unidata Science Gateway Leverages Innovative Capabilities of the NSF Jetstream2 Cloud for Atmospheric Science Education by Julien Chastang (640650)

“…</p><p><br></p><p dir="ltr">This presentation will highlight two case studies that demonstrate the practical applications of our advanced computational tools. …”

Data and code for: Automatic fish scale analysis by Christian Vogelmann (21646472)

“…</p><h3>Includeed in this repository:</h3><ul><li><b>Raw data files:</b></li><li><code>comparison_all_scales.csv</code> – comparison_all_scales.csv - manually verified vs. automated measurements of 1095 coregonid scales</li></ul><ul><li><ul><li><code>Validation_data.csv</code> – manually measured scale data under binocular</li><li><code>Parameter_correction_numeric.csv</code> – calibration data (scale radius vs. fish length/weight)</li></ul></li><li><b>Statistical results:</b></li><li><ul><li><code>comparison_stats_core_variables.csv</code> – verification statistics (bias, relative error, limits of agreement)</li><li><code>Validation_statistics.csv</code> – summary statistics and model fits (manual vs. automated)</li></ul></li><li><b>Executable script (not GUI):</b></li><li><ul><li><code>Algorithm.py</code> – core processing module for scale feature extraction<br>→ <i>Note: The complete Coregon Analyzer application (incl. …”

Integrating Scientific GUI Applications into Autoscaled Science Gateway Environments by Julien Chastang (640650)

Efficient, Hierarchical, and Object-Oriented Electronic Structure Interfaces for Direct Nonadiabatic Dynamics Simulations by Sascha Mausenberger (22225772)

“…We present a novel, flexible framework for electronic structure interfaces designed for nonadiabatic dynamics simulations, implemented in Python 3 using concepts of object-oriented programming. …”

PTPC-UHT bounce by David Parry (22169299)

“…<br>It contains the full Python implementation of the PTPC bounce model (<code>PTPC_UHT_bounce.py</code>) and representative outputs used to generate the figures in the paper. …”

Presentations of the Summer School - Satellite-Based Hydrological Data Assimilation by Maike Schumacher (8023076)

“…appeared very motivated In the first day, we learned about global hydrological modelling described by <a href="https://www.linkedin.com/in/henrik-madsen-a1841936/" target="_blank">Henrik Madsen</a> (DHI); a great introduction of satellite gravity and its application in hydrology and climate science was given by <a href="https://www.linkedin.com/in/guillaume-ramillien-3292b42a/" target="_blank">Guillaume Ramillien</a> Centre National de la Recherche Scientifique, CNRS); our third guest lecturer <a href="https://www.linkedin.com/in/anke-fluhrer-77b6862a3/" target="_blank">Anke Fluhrer</a> (German Aerospace Center, DLR) presented soil moisture remote sensing and excellent tools to retrieve the data for hydrological applications; <a href="https://www.linkedin.com/in/maike-schumacher-814307122/" target="_blank">Maike Schumacher</a> (Aalborg University, AAU) gave a presentation about physical data assimilation through the introduction of a simple hydrological model and connected it to distributed hydrological models. …”

Code and data for reproducing the results in the original paper of DML-Geo by Pengfei CHEN (8059976)

“…<p dir="ltr">This asset provides all the code and data for reproducing the results (figures and statistics) in the original paper of DML-Geo</p><h2>Main Files:</h2><p dir="ltr"><b>main.ipynb</b>: the main notebook to generate all the figures and data presented in the paper</p><p dir="ltr"><b>data_generator.py</b>: used for generating synthetic datasets to validate the performance of different models</p><p dir="ltr"><b>dml_models.py</b>: Contains implementations of different Double Machine Learning variants used in this study.…”

Data for "A hollow fiber membrane permeance evaluation device demonstrating outside-in and inside-out performance differences" by Timothy Warner (20222838)

“…</li><li>Figures generated by the python code.</li></ol><h2>Key References</h2><h3>Membrane flux analysis tool:</h3><ul><li>Citation: Warner, Timothy; Mullins, Nathan; de Lannoy, Charles-François (2025). …”

Data sets and coding scripts for research on sensory processing in ADHD and ASD by Vesko Varbanov (9687029)

“…The repository includes raw and matched datasets, analysis outputs, and the full Python code used for the matching pipeline.</p><h4>Ethics and Approval</h4><p dir="ltr">All procedures were approved by the University of Sheffield Department of Psychology Ethics Committee (Ref: 046476). …”