Performance Benchmark: SBMLNetwork vs. SBMLDiagrams Auto-layout. حسب Adel Heydarabadipour (22290905)

"…<p>Log–log plot of median wall-clock time for SBMLNetwork’s C++-based auto-layout engine (blue circles, solid fit) and SBMLDiagrams’ implementation of the pure-Python NetworkX spring_layout algorithm (red squares, dashed fit), applied to synthetic SBML models containing 20–2,000 species, with a fixed 4:1 species-to-reaction ratio. …"

Probabilistic-QSR-GeoQA حسب Mohammad Kazemi (19442467)

"…<p dir="ltr">The code and data are related to the paper Mohammad Kazemi Beydokhti, Matt Duckham, Amy L. …"

Genosophus: A Dynamical-Systems Diagnostic Engine for Neural Representation Analysis حسب Alan Glanz (22109698)

"…</p><h2><b>Included Files</b></h2><h3><b>1. </b><code><strong>GenosophusV2.py</strong></code></h3><p dir="ltr">Executable Python implementation of the Genosophus Engine.…"

Genomic Surveillance of Pemivibart (VYD2311) Escape-Associated Mutations in SARS-CoV-2: December 2025 BioSamples (n=2) حسب Tahir Bhatti (20961974)

"…Full source code and version details are available upon request.…"

Table & Figure.pdfBrainwaves and Higher-Order Thinking: An EEG Study of Cognitive Engagement in Mathematics Tasks حسب NORLIZA BINTI MOHAMED (20739875)

"…Supplementary Materials</p> <p><br></p> <p>Experimental protocols and study design details</p> <p><br></p> <p>Questionnaires, surveys, or rubrics used in the study</p> <p><br></p> <p>Educational materials related to HOTS-based mathematics tasks</p> <p><br></p> <p><br></p> <p><br></p> <p>3. Code and Algorithms (if applicable)</p> <p><br></p> <p>Scripts for EEG signal processing and analysis</p> <p><br></p> <p>Machine learning or statistical modeling scripts</p> <p><br></p> <p>Any software implementation used to analyze brainwave patterns</p> <p><br></p> <p><br></p> <p><br></p> <p>4. …"

Raw Data EEG.pdfBrainwaves and Higher-Order Thinking: An EEG Study of Cognitive Engagement in Mathematics Tasks حسب NORLIZA BINTI MOHAMED (20739875)

"…Supplementary Materials</p> <p><br></p> <p>Experimental protocols and study design details</p> <p><br></p> <p>Questionnaires, surveys, or rubrics used in the study</p> <p><br></p> <p>Educational materials related to HOTS-based mathematics tasks</p> <p><br></p> <p><br></p> <p><br></p> <p>3. Code and Algorithms (if applicable)</p> <p><br></p> <p>Scripts for EEG signal processing and analysis</p> <p><br></p> <p>Machine learning or statistical modeling scripts</p> <p><br></p> <p>Any software implementation used to analyze brainwave patterns</p> <p><br></p> <p><br></p> <p><br></p> <p>4. …"

Online Resource: Reservoir Computing as a Promising Approach for False Data Injection Attack Detection in Smart Grids حسب Carl-Hendrik Peters (21530624)

"…</li><li><b>3_literature_analysis_and_mapping.ipynb</b><br>Contains the Python code used for executing the systematic mapping study (SMS), including automated processing of literature data and thematic clustering.…"

Intersection and distinction of essential compounds and targets from 5 primary sources. حسب Gyaltsen Dakpa (21439920)

"…<b>(B)</b> UniProt and SwissTarget Prediction-predicted target proteins and 658 actives are intersected using the Jvenn Python to plot the intersection of targets in which Purple represents <i>R. officinalis</i>, Green indicates S. officinalis, Orange represents <b><i>T.…"

<b>Dataset for manuscript: </b><b>Phylogenetic and genomic insights into the evolution of terpenoid biosynthesis genes in diverse plant lineages</b> حسب Puguang Zhao (19023065)

"…</p><p dir="ltr"> Generates a scatter plot with a linear regression line and saves it as 'Correlation_Plot.pdf' (Figure 5D).…"

Supplementary file 1_ParaDeep: sequence-based deep learning for residue-level paratope prediction using chain-aware BiLSTM-CNN models.docx حسب Piyachat Udomwong (22563212)

"…Its efficiency and scalability make it well-suited for early-stage antibody discovery, repertoire profiling, and therapeutic design, particularly in the absence of structural data. The implementation is freely available at https://github.com/PiyachatU/ParaDeep, with Python (PyTorch) code and a Google Colab interface for ease of use.…"

MCCN Case Study 3 - Select optimal survey locality حسب Donald Hobern (21435904)

"…</p><p dir="ltr">This is a simple implementation that uses four environmental attributes imported for all Australia (or a subset like NSW) at a moderate grid scale:</p><ol><li>Digital soil maps for key soil properties over New South Wales, version 2.0 - SEED - see <a href="https://esoil.io/TERNLandscapes/Public/Pages/SLGA/ProductDetails-SoilAttributes.html" target="_blank">https://esoil.io/TERNLandscapes/Public/Pages/SLGA/ProductDetails-SoilAttributes.html</a></li><li>ANUCLIM Annual Mean Rainfall raster layer - SEED - see <a href="https://datasets.seed.nsw.gov.au/dataset/anuclim-annual-mean-rainfall-raster-layer" target="_blank">https://datasets.seed.nsw.gov.au/dataset/anuclim-annual-mean-rainfall-raster-layer</a></li><li>ANUCLIM Annual Mean Temperature raster layer - SEED - see <a href="https://datasets.seed.nsw.gov.au/dataset/anuclim-annual-mean-temperature-raster-layer" target="_blank">https://datasets.seed.nsw.gov.au/dataset/anuclim-annual-mean-temperature-raster-layer</a></li></ol><h4><b>Dependencies</b></h4><ul><li>This notebook requires Python 3.10 or higher</li><li>Install relevant Python libraries with: <b>pip install mccn-engine rocrate</b></li><li>Installing mccn-engine will install other dependencies</li></ul><h4><b>Overview</b></h4><ol><li>Generate STAC metadata for layers from predefined configuratiion</li><li>Load data cube and exclude nodata values</li><li>Scale all variables to a 0.0-1.0 range</li><li>Select four layers for comparison (soil organic carbon 0-30 cm, soil pH 0-30 cm, mean annual rainfall, mean annual temperature)</li><li>Select 10 random points within NSW</li><li>Generate 10 new layers representing standardised environmental distance between one of the selected points and all other points in NSW</li><li>For every point in NSW, find the lowest environmental distance to any of the selected points</li><li>Select the point in NSW that has the highest value for the lowest environmental distance to any selected point - this is the most different point</li><li>Clean up and save results to RO-Crate</li></ol><p><br></p>…"

Ambient Air Pollutant Dynamics (2010–2025) and the Exceptional Winter 2016–17 Pollution Episode: Implications for a Uranium/Arsenic Exposure Event حسب Thomas Clemens Carmine (19756929)

"…Includes imputation statistics, data dictionary, and the Python imputation code (Imputation_Air_Pollutants_NABEL.py). …"

The global dryland lake storage (GDLS) dataset حسب Gang Zhao (18368925)

"…</b><b>ipynb</b><br>A Python example to show the location of a given lake and to plot monthly time series of area/elevation/storage for this lake.…"

Interleg coordination in 103 adult <i>Hypsibius exemplaris</i> individuals. حسب Emma M. Anderson (19697573)

"…D. Probability density plot of ϕ_C vs. ϕ_I for second and third pair legs, n = 4414 strides. …"

Data files accompanying our PLoS One publication حسب Peter Hinow (21810605)

"…The videos were digitized and the positional data were saved in .xlsx or .csv format, respectively. The python codes contain the numerical implementations of our mathematical models.…"

Tracking when the number of individuals in the video frame changes. حسب Hirotsugu Azechi (20700528)

"…The diagram illustrates changes across different experimental conditions, with plots indicating the frequency for each keypoint and bars representing each ID pair. …"

Sonification of Warming Stripes حسب Christopher Harrison (9448751)

"…A zip file containing all of the scripts (in the form of Python Jupyter notebooks) that were used to produce the sonification, and the plots for the explanation article (Sonification Warming Stripes.pdf). …"

Hippocampal and cortical activity reflect early hyperexcitability in an Alzheimer's mouse model حسب Marina Diachenko (19739092)

"…</p><p dir="ltr">All data are available upon request. The standalone Python implementation of the fE/I algorithm is available under a CC-BY-NC-SA license at <a href="https://github.com/arthur-ervin/crosci" target="_blank">https://github.com/arthur-ervin/crosci</a>. …"

<b>Rethinking neighbourhood boundaries for urban planning: A data-driven framework for perception-based delineation</b> حسب Shubham Pawar (22471285)

"…Each color represents a distinct cluster.</p><p dir="ltr"><b>Code to generate:</b></p><pre><pre>import geopandas as gpd<br>import matplotlib.pyplot as plt<br><br>gdf = gpd.read_file('.…"

Gene Editing using Transformer Architecture حسب Rishabh Garg (5261744)

"…., the H-Bot sequence), it facilitates on-screen gene editing, enabling targeted mutations or the insertion of desired genes. Implementation requires Python and deep learning frameworks like TensorFlow or PyTorch, with optional use of Biopython for genetic sequence handling. …"