Phylogenomics of aquatic bacteria by Krzysztof Jurdzinski (12519700)

“…</p> <p><br></p> <p>all_MSG_ids.txt - a text file with names of all the representative MAGs within all the MSG pairs.</p> <p><br></p> <p>filter_MSGs.py - a Python script to extract the MAGs from within the MSGs (given all_MSG_ids.txt) from a folder containing a larger set of sequences.…”

Data files accompanying our PLoS One publication by Peter Hinow (21810605)

“…The videos were digitized and the positional data were saved in .xlsx or .csv format, respectively. The python codes contain the numerical implementations of our mathematical models.…”

Hippocampal and cortical activity reflect early hyperexcitability in an Alzheimer's mouse model by Marina Diachenko (19739092)

“…</p><p dir="ltr">All data are available upon request. The standalone Python implementation of the fE/I algorithm is available under a CC-BY-NC-SA license at <a href="https://github.com/arthur-ervin/crosci" target="_blank">https://github.com/arthur-ervin/crosci</a>. …”

Improving the calibration of an integrated CA-What If? digital planning framework by CA What If? (21381170)

“…</p><p dir="ltr">This dataset includes (1) all required data for reproducing the materials within the manuscript, (2) detailed Python codes of the proposed CA-What If? model, and (3) a step-by-step instruction document.…”

Gene Editing using Transformer Architecture by Rishabh Garg (5261744)

“…., the H-Bot sequence), it facilitates on-screen gene editing, enabling targeted mutations or the insertion of desired genes. Implementation requires Python and deep learning frameworks like TensorFlow or PyTorch, with optional use of Biopython for genetic sequence handling. …”

<b>Challenges and Strategies for the Management of Quality-Oriented Education Bases in Universities under Informatization Background</b> by Yang Yanxi (21571568)

“…Final codes, together with basic demographic attributes supplied by the institutions’ HR offices, were exported to Excel and cleaned in Python 3.10 using pandas 2.2.1 and numpy 1.26. …”

Supplementary Material from Multiple scales analysis of slow–fast quasi-linear systems by G. Michel (6395960)

“…In each case, numerical simulations of both the full and reduced dynamical systems are performed to highlight the accuracy and efficiency of the multiple scales approach. Python codes are provided as electronic supplementary material.…”

UrbanWater: integrating EPANET 2 in a PostgreSQL/PostGIS-based geospatial database management system. by Nuno M. Martinho (8860960)

“…Required procedures and functions were coded either in pgSQL or Python and their execution were carried out using SQL statements. …”

PLURAL - Place-level urban-rural indices for the United States from 1930 to 2018 by Johannes H. Uhl (9706325)

“…</p> <p><strong>Apply the PLURAL rural-urban classification to your own data: </strong>Python code is fully open source and available at <a href="https://github.com/johannesuhl/plural" target="_blank">https://github.com/johannesuhl/plural</a>.…”

Displaying visual stimuli and recording audio by Parisa Supitayakul (12300770)

“…The implementation is done in Python 3.5.2 and it deploys several functions from the package pydub 0.25.1.…”

Annotated free paraphrases and difficulty of interpretation for 45 novel English noun-noun compounds by Martin Schäfer (6584138)

“…Each compound has a variety of possible interpretations, and the free paraphrases are coded for the interpretation they represent. </div><div><br></div><div>All the novel compounds occur just once in ukWaC (Baroni et al. 2009), a 2-billion-word corpus of English. …”

Incorporating IoT Sensor Data and Physical parameter data for Maize Crop Yield Analysis. by Tosin Comfort Olayinka (16843740)

“…</li></ul><p>Furthermore, accompanying the dataset are the Python notebook code used for data merging and visual images depicting portions of the dataset. …”

Chromosomal rearrangements among clade A pathogenic <i>Cryptococcus</i> species. by Marco A. Coelho (7353659)

“…<p>(A) Synteny comparisons between <i>C. neoformans</i> strain 125.91 (reference) and representative strains from 7 other clade A species (8 species total). …”

MSc Personalised Medicine at Ulster University by Steven Watterson (100045)

“…</b> Introducing computational approaches to studying genes, proteins or metabolites, this module teaches Python coding, data analysis and how to work with the databases that support data analysis.…”

Supplemental Data for Kogay and Zhaxybayeva (2022) by Olga Zhaxybayeva (3818761)

“…</p> <p><br></p> <p><u><strong>Code:</strong></u></p> <p><strong>exp_enc_deviation.py: </strong>Python script that calculates the expected effective number of codons (ENC) based on the GC3s content and the deviation from the expectations under the null model of no codon bias.…”

Supplementary Data: Biodiversity and Energy System Planning - Queensland 2025 by Andrew Rogers (17623239)

“…</p><h2>Software and Spatial Resolution</h2><p dir="ltr">The VRE siting model is implemented using Python and relies heavily on ArcGIS for comprehensive spatial data handling and analysis.…”

PepENS by Abel Chandra (16854753)

“…<br><br>Download and Use</p><p dir="ltr">The codes for Datasets 1 and 2 are found in the respective folders of this repository.…”

Gladier - A programmable data capture, storage, and analysis architecture for experimental facilities by Kyle Chard (5131859)

“…Each service can be accessed via REST APIs, and/or from Python via a simple client library (which calls the REST APIs). …”