Methodological Approach Based on Structural Parameters, Vibrational Frequencies, and MMFF94 Bond Charge Increments for Platinum-Based Compounds by Gloria Castañeda-Valencia (20758502)

“…The developed bci optimization tool, based on MMFF94, was implemented using a Python code made available at https://github.com/molmodcs/bci_solver. …”

Void-Center Galaxies and the Gravity of Probability Framework: Pre-DESI Consistency with VGS 12 and NGC 6789 by Jordan Waters (21620558)

“…<br><br><br><b>ORCID ID: https://orcid.org/0009-0009-0793-8089</b><br></p><p dir="ltr"><b>Code Availability:</b></p><p dir="ltr"><b>All Python tools used for GoP simulations and predictions are available at:</b></p><p dir="ltr"><b>https://github.com/Jwaters290/GoP-Probabilistic-Curvature</b><br><br>The Gravity of Probability framework is implemented in this public Python codebase that reproduces all published GoP predictions from preexisting DESI data, using a single fixed set of global parameters. …”

Probabilistic-QSR-GeoQA by Mohammad Kazemi (19442467)

“…</p><p><br></p><p><br></p><p dir="ltr"><b>Perquisites</b></p><p dir="ltr">Two spatial reasoning tools, SparQ for conventional reasoning and Probcog for probabilistic reasoning need to be installed:</p><p><br></p><p dir="ltr">- Probcog ( Follow the their github repo in https://github.com/opcode81/ProbCog)</p><p dir="ltr">- SparQ (Follow their manual in https://www.uni-bamberg.de/fileadmin/sme/SparQ/SparQ-Manual.pdf)</p><p><br></p><p><br></p><p dir="ltr"><b>Materials</b></p><p dir="ltr">This includes codes, data, evidence sets, and mln folders for two experiments:</p><p dir="ltr">- Code: This folder includes questionGenerator.py and answerExtraction.py for generating synthetic questions and post-processing of inferences from Probcog and SparQ reasoners. …”

Genomic Surveillance of Pemivibart (VYD2311) Escape-Associated Mutations in SARS-CoV-2: December 2025 BioSamples (n=2) by Tahir Bhatti (20961974)

“…The pipeline integrates established open-source tools (fastp, BWA-MEM, samtools, iVar, bcftools) and implements <b>codon-aware mutation calling</b> at five canonical RBD positions (R346, S371, K444, F456, F486) relative to NC_045512.2. …”

Supplementary Data: Biodiversity and Energy System Planning - Queensland 2025 by Andrew Rogers (17623239)

“…</p><h2>Software and Spatial Resolution</h2><p dir="ltr">The VRE siting model is implemented using Python and relies heavily on ArcGIS for comprehensive spatial data handling and analysis.…”