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BaNDyT: Bayesian Network Modeling of Molecular Dynamics Trajectories
Published 2025“…We believe that BaNDyT is the first software package to include specialized and advanced features for analyzing MD simulation trajectories using a probabilistic graphical network model. We describe here the software’s uses, the methods associated with it, and a comprehensive Python interface to the underlying generalist BNM code. …”
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Python code for hierarchical cluster analysis of detected R-strategies from rule-based NLP on 500 circular economy definitions
Published 2025“…</p><p dir="ltr">This Python code was optimized and debugged using ChatGPT-4o to ensure implementation efficiency, accuracy, and clarity.…”
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6. Motif Code Theory
Published 2025“…<p dir="ltr">The Motif Code Theory (MCT) simulation code, mct_unified_code.py, is a Python 3.9 script that models the universe as a time-dependent directed multigraph G(t) = (V(t), E(t)) with N=10^7 vertices (representing quantum fields/particles) and edges (interactions). …”
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The codes and data for "Lane Extraction from Trajectories at Road Intersections Based on Graph Transformer Network"
Published 2024“…</p><h3><b>Model training</b></h3><h4><code>python train_GTN.py</code></h4><p dir="ltr">This step trains the GTN model. …”
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Numerical data and codes for "Noisy Probabilistic Error Cancellation and Generalized Physical Implementability"
Published 2025“…<p dir="ltr">This data set contains the data and codes for "Noisy Probabilistic Error Cancellation and Generalized Physical Implementability". We numerically simulate the bias of noisy probabilistic error cancellation with noisy Pauli operations and the bias of error model violation.…”
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BGC-Prophet
Published 2025“…/output/ --name split --threads 10</code></pre><p dir="ltr"><b>4. Gene Prediction</b></p><p dir="ltr">Detect BGC genes using a trained model:</p><pre><code>bgc_prophet predict --datasetPath .…”
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Performance comparison of cyber security techniques in IoMT healthcare devices.
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