Things to do after installing mdciao. حسب Guillermo Pérez-Hernández (21156182)

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Distribution of closest heavy-atom—heavy-atom distances over five different MD datasets (S1 Table). حسب Guillermo Pérez-Hernández (21156182)

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Complete text output printed to the terminal by the CLT (shown in Fig 2A) of the main text. حسب Guillermo Pérez-Hernández (21156182)

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Example Jupyter notebook illustrating how mdciao can be used in API mode. حسب Guillermo Pérez-Hernández (21156182)

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Table 1 - mdciao: Accessible Analysis and Visualization of Molecular Dynamics Simulation Data حسب Guillermo Pérez-Hernández (21156182)

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Longer-range peaks of S2 Fig (using arrows and the *, ⁑, †, ‡, and ⸸ symbols) not corresponding to short-range contacts, but rather secondary structure elements like beta-sheets or... حسب Guillermo Pérez-Hernández (21156182)

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Example Jupyter notebook illustrating how mdciao is used in API mode. حسب Guillermo Pérez-Hernández (21156182)

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Overview of one حسب Guillermo Pérez-Hernández (21156182)

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PyGMT – Accessing and Integrating GMT with Python and the Scientific Python Ecosystem (AGU24, U12B-05) حسب Yvonne Fröhlich (20442683)

"…</p><p dir="ltr">PyGMT (<a href="https://www.pygmt.org/" target="_blank">https://www.pygmt.org/</a>) wraps around the very fast GMT C code to make it accessible through the Python programming language. …"

Reproducible implementation for article: Reproducibility study of the modular and reusable model of epithelial transport in the proximal convoluted tubule حسب Leyla Noroozbabaee (14301173)

Analysis variance P-value table for wear rate regression model. حسب Hosamane Guruswamy Prashantha Kumar (21433265)

BSTPP: a python package for Bayesian spatiotemporal point processes حسب Isaac Manring (20705955)

"…There is a lack of packages with the ability to perform inference for these models, particularly in python. Thus we present BSTPP a python package for Bayesian inference on spatiotemporal point processes. …"

1-D Transient NDDDCS model for simulating start-up, load ramp and turbine islanding scenarios حسب WIAN Strydom (19967778)

Ibis, DuckDB, and GeoParquet: Making Geospatial Analytics Fast, Simple, and Pythonic (DuckCon 2025) حسب Natalia C. Clementi (4011515)

HaPy-Bug – Human Annotated Python Bug Resolution Dataset حسب Piotr Przymus (14564009)

"…<p dir="ltr">We present HaPy-Bug, a curated dataset of 793 Python source code commits associated with bug fixes, with each line of code annotated by three domain experts. …"

PythonForRoyalSociety.py from The formation energy of triple lines حسب Paul Twine (22587761)

Entropy Scaling of Viscosity IVApplication to 124 Industrially Important Fluids حسب Viktor Martinek (20542203)

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Efficient, Hierarchical, and Object-Oriented Electronic Structure Interfaces for Direct Nonadiabatic Dynamics Simulations حسب Sascha Mausenberger (22225772)

"…We present a novel, flexible framework for electronic structure interfaces designed for nonadiabatic dynamics simulations, implemented in Python 3 using concepts of object-oriented programming. …"

Code used to run simulations and generate figures. حسب Guillaume Mestdagh (22656397)

"…<p>The archive contains the Python code to reproduce simulations presented in this paper. …"

<b>Opti2Phase</b>: Python scripts for two-stage focal reducer حسب Morgan Najera (21540776)

"…<p dir="ltr"><b>Opti2Phase: Python Scripts for Two-Stage Focal Reducer Design</b></p><p dir="ltr">The folder <b>Opti2Phase</b> contains the Python scripts used to generate the results presented in the manuscript. …"