Fast, FAIR, and Scalable: Managing Big Data in HPC with Zarr حسب Alfonso Ladino (21447002)

MXene_defects_data.zip حسب Konstantin Klyukin (22147942)

"…<h4>The files support the work "Defect-Driven Degradation of MXenes in Aqueous Environments and Mitigation Strategies: Insights from First-Principles".…"

2024 HUD Point in Time Count Data by State and CoC with Serious Mental Illness and Chronic Substance Use Counts حسب Benjamin Gorman (21648794)

"…</p><p dir="ltr">HUD PIT Count reports for states, Washington, DC, and the 384 CoCs were systematically downloaded from the HUD Exchange website using a Python script developed using Cursor software. Cursor uses large language models, especially Claude Sonnet 4 (Anthropic), to generate code. …"

<i>In vivo</i> identification of <i>Toxoplasma gondii</i> antigenic proteins and <i>in silico</i> study of their polymorphism. حسب Julie DENIS (19696753)

"…The filtered data is presented in the <b>Filtered_Variants</b> document.…"

<b>InterHub: A Naturalistic Trajectory Dataset with Dense Interaction for Autonomous Driving</b> حسب Xiyan Jiang (20320758)

"…</b></li></ul><p dir="ltr">The Python codes used to process and analyze the dataset can be found at <a href="https://github.com/zxc-tju/InterHub" rel="noreferrer" target="_blank">https://github.com/zxc-tju/InterHub</a>. …"

Supplementary Data: Biodiversity and Energy System Planning - Queensland 2025 حسب Andrew Rogers (17623239)

"…</li></ul><h3>Analysis Scripts</h3><p dir="ltr">Complete set of R scripts for reproducing all analyses:</p><ul><li><b>percent cost increase_line plot.R</b>: Creates visualizations of energy cost impacts under different conservation scenarios</li><li><b>Zonation curves.R</b>: Generates conservation performance curves and coverage statistics</li><li><b>NPV_bar_plot.R</b>: Produces economic analysis plots with Net Present Value breakdowns</li><li><b>domestic_export_map_iterations.R</b>: Creates spatial maps of renewable energy infrastructure for domestic and export scenarios</li></ul><h2>Technical Specifications</h2><h3>Data Formats</h3><ul><li><b>Spatial Data</b>: ESRI Geodatabase (.gdb), Shapefile (.shp), GeoTIFF (.tif)</li><li><b>Tabular Data</b>: CSV, Microsoft Excel (.xlsx, .xls)</li><li><b>Analysis Code</b>: R scripts (.R)</li></ul><h3>Software Requirements</h3><ul><li><b>R</b> (≥4.0.0) with packages: sf, dplyr, ggplot2, readr, readxl, tidyr, furrr, ozmaps, ggpattern</li><li><b>ESRI ArcGIS</b> or <b>QGIS</b> for geodatabase access and spatial analysis</li><li><b>Zonation</b> conservation planning software (for methodology understanding)</li></ul><h3>Hardware Recommendations</h3><ul><li><b>RAM</b>: 16GB minimum (32GB recommended for full spatial analysis)</li><li><b>Storage</b>: 15GB free space for data extraction and processing</li><li><b>CPU</b>: Multi-core processor recommended for parallel processing scripts</li></ul><h2>Detailed Description of the VRE Siting and Cost-Minimization Model</h2><p><br></p><p dir="ltr">This section provides an in-depth description of the Variable Renewable Energy (VRE) siting model, including the software, the core algorithm, and the optimisation process used to determine the least-cost, spatially constrained development trajectory for VRE infrastructure in Queensland, Australia.…"

Knowledge Graph validation using SHACL Shapes حسب Ángel Iglesias Préstamo (19745767)

"…Our benchmarks show that rudof provides a robust and scalable solution for developers and researchers working with large RDF datasets.</p>…"

Online Test-time Adaptation for Interatomic Potentials حسب Cui Taoyong (18076012)

"…Electrolyte Solution Dataset: TAIP_dataset/TAIP_dataset.zip/Etyde The electrolyte solution dataset is based on previous work (Cui et al., 2024) and includes eight different electrolyte compositions, featuring lithium and sodium ions. …"

Continental-scale impact of bomb radiocarbon affects historical fossil fuel carbon dioxide reconstruction حسب Jing Li (21564146)

"…</p><p dir="ltr"><b>Source CO2 data (Mauna Loa).xlsx:</b> CO2 data from Mauna Loa (MLO) which belong to Global Greenhouse Gas Reference Network were used in this study as the background CO2 levels, which available from 1970 to 2020 (https://gml.noaa.gov/ccgg/trends/).14</p><p dir="ltr"><b>Statistical analysis code and data (SI table 1-2,4) folder: </b>It contains the python code, source data and results that conducted the statistical analysis. …"

<b>Challenges and Strategies for the Management of Quality-Oriented Education Bases in Universities under Informatization Background</b> حسب Yang Yanxi (21571568)

"…Final codes, together with basic demographic attributes supplied by the institutions’ HR offices, were exported to Excel and cleaned in Python 3.10 using pandas 2.2.1 and numpy 1.26. …"

<b>AutoMated tool for Antimicrobial resistance Surveillance System version 3.1 (AMASS3.1)</b> حسب Chalida Rangsiwutisak (10501496)

"…;</li><li><i>Enterococcus</i> <i>faecalis</i> and <i>E. faecium</i> have been explicitly included in the pathogens under the survey (while <i>Enterococcus</i> spp. are used in the AMASS version 2.0);</li><li>We have added a few antibiotics in the list of antibiotics for a few pathogens under the survey;</li></ol><p dir="ltr">Technical aspects</p><ol><li>We have added a configuration for “Annex C: Cluster signals” in Configuration.xlsx;</li><li>We have improved the algorithm to support more several date formats;</li><li>We have improved the algorithm to translate data files;</li><li>We have improved Data_verification_logfile report to present local languages of the variable names and values (according to how they were recorded in the data files) in the report;</li><li>We have improved Annex B: Data indicators to support a larger data set;</li><li>We have used only Python rather than R + Python (as used in the AMASSv2.0);</li><li>We have set a default config for infection origin stratification by allowing a specimen collected two calendar days before the hospital admission date and one day after the hospital discharge date into consideration. …"

“Genie Replication Package: Resolution of Kryptos K4 via Berlin Clock Route and Substitution Funnel” حسب Alan Glanz (22109698)

"…<h2>Research Description</h2><p dir="ltr">This work presents a replication-ready implementation of the <b>Genie Engine</b>, an algorithmic framework designed to evaluate candidate solutions for the final section (K4) of the <i>Kryptos</i> sculpture at CIA Headquarters. …"

Datasets and Trajectories for Online Test-time Adaptation for Better Generalization of Interatomic Potentials to Out-of-distribution Data حسب Cui Taoyong (18076012)

"…The MD simulations for evaluating the performance of TAIP are conducted using the Atomic Simulation Environment (ASE) Python library. SchNet and PaiNN are used, respectively, as the baseline models to produce the potential energy and interatomic forces. …"

MCCN Case Study 1 - Evaluate impact from environmental events/pressures حسب Donald Hobern (21435904)

"…filters=eyJTVEFURSI6WyJBQ1QiXX0=&location=-35.437128,149.203518,11.00</a></li><li><b>caladenia_act.csv</b> - Distribution records for orchids in the genus <i>Caladenia</i> between 1990 and present from the ALA in CSV format: <a href="https://doi.org/10.26197/ala.1e501311-7077-403b-a743-59e096068fa0" target="_blank">https://doi.org/10.26197/ala.1e501311-7077-403b-a743-59e096068fa0</a></li></ul><h4><b>Dependencies</b></h4><ul><li>This notebook requires Python 3.10 or higher</li><li>Install relevant Python libraries with: <b>pip install mccn-engine rocrate</b></li><li>Installing mccn-engine will install other dependencies</li></ul><h4><b>Overview</b></h4><ol><li>Group orchid species records by species</li><li>Prepare STAC metadata records for each data source (separate records for the distribution data for each orchid species)</li><li>Load data cube</li><li>Mask orchid distribution records to boundaries of ACT</li><li>Calculate the proportion of distribution records for each species occurring inside and outside protected areas</li><li>Calculate the proportion of distribution records for each species occurring in areas with each class of vegetation cover</li><li>Report the apparent affinity between each species and protected areas and between each species and different classes of vegetation cover</li></ol><h4><b>Notes</b></h4><ul><li>No attempt is made here to compensate for underlying bias in the areas where observers have spent time recording orchids. …"

A potential pitfall in the interpretation of microscope-integrated fluorescence angiography: the center-periphery effect. - raw data حسب Stolk (20652617)

"…The signal was quantified using tailor-made software in Python. <b>Results</b>: A clear center-periphery effect was present in most settings in both microscopes, with the highest peripheral fluorescence signal loss in the lowest MF: 100% in the Tivato and 83% in the Pentero. …"

Wolframin Degradome Foundation Atlas حسب Axel Petzold (7076261)

"…To extract, use the following command in a bash terminal:</p><pre><pre>tar -xvJf Wolframin_Degradome_Foundation_Atlas_v3.tar.gz<br></pre></pre><p dir="ltr"><b>Codes</b><br>Dataset generation is fully reproducible using three open-source tools: <b>Python, BLAST, and SAS</b>. …"

Investigating the advantages and disadvantages of available open-source frameworks for prototyping data-based applications حسب eRNZ Admin (6438486)

Globus Compute: Federated FaaS for Integrated Research Solutions حسب eRNZ Admin (6438486)

"…However, the pervasive use of HPC presents new challenges as researchers must familiarize themselves with complex environments, batch schedulers, and authentication schemes.…"

<b>The abundance of ground-level atmospheric ice-nucleating particles and aerosol properties </b><b>in the North Slope of Alaska</b> حسب Aidan Pantoya (19416546)

"…An individual method-oriented data abstract is available in metadata for each output sub-folder. All Python codes used for processing input data and generating output data are paired with the readme files and archived in folders. …"