Phylogenomics of aquatic bacteria حسب Krzysztof Jurdzinski (12519700)

"…</p> <p><br></p> <p>all_MSG_ids.txt - a text file with names of all the representative MAGs within all the MSG pairs.</p> <p><br></p> <p>filter_MSGs.py - a Python script to extract the MAGs from within the MSGs (given all_MSG_ids.txt) from a folder containing a larger set of sequences.…"

Optical Tactile (TacTip) Dataset for texture classification حسب Dexter Shepherd (13238508)

"…</p><p dir="ltr">X shape: (Number, frame, h, w)</p><p dir="ltr">y shape: (Number,)</p><p dir="ltr"><br></p><p dir="ltr">All files are in compressed numpy format. Python users can load in the dataset using the code provided in the ReadMe.…"

<b>Use case codes of the DDS3 and DDS4 datasets for bacillus segmentation and tuberculosis diagnosis, respectively</b> حسب Marly G F Costa (19812192)

"…These filters were applied after segmentation and before the diagnosis13.</p><p dir="ltr">5.⁠ ⁠…"

Table 3_Novel deep learning-based prediction of HER2 expression in breast cancer using multimodal MRI, nomogram, and decision curve analysis.docx حسب Shi Qiu (425335)

"…Statistical analyses were conducted using Python and R, with significance set at p < 0.05.</p>Results<p>In this study, we developed an integrated predictive model for HER2 status in breast cancer by combining deep learning-based MRI features and clinical data. …"

Table 2_Novel deep learning-based prediction of HER2 expression in breast cancer using multimodal MRI, nomogram, and decision curve analysis.docx حسب Shi Qiu (425335)

"…Statistical analyses were conducted using Python and R, with significance set at p < 0.05.</p>Results<p>In this study, we developed an integrated predictive model for HER2 status in breast cancer by combining deep learning-based MRI features and clinical data. …"

Table 1_Novel deep learning-based prediction of HER2 expression in breast cancer using multimodal MRI, nomogram, and decision curve analysis.docx حسب Shi Qiu (425335)

"…Statistical analyses were conducted using Python and R, with significance set at p < 0.05.</p>Results<p>In this study, we developed an integrated predictive model for HER2 status in breast cancer by combining deep learning-based MRI features and clinical data. …"

Data Sheet 1_Novel deep learning-based prediction of HER2 expression in breast cancer using multimodal MRI, nomogram, and decision curve analysis.docx حسب Shi Qiu (425335)

"…Statistical analyses were conducted using Python and R, with significance set at p < 0.05.</p>Results<p>In this study, we developed an integrated predictive model for HER2 status in breast cancer by combining deep learning-based MRI features and clinical data. …"

Improving the calibration of an integrated CA-What If? digital planning framework حسب CA What If? (21381170)

"…</p><p dir="ltr">This dataset includes (1) all required data for reproducing the materials within the manuscript, (2) detailed Python codes of the proposed CA-What If? model, and (3) a step-by-step instruction document.…"

Code and data for reproducing the results in the original paper of DML-Geo حسب Pengfei CHEN (8059976)

"…</p><p dir="ltr"><b>rslt.pkl</b>: A pickled Python object that stores the explainer based on geoshapley for dataset 1.…"

Ambient Air Pollutant Dynamics (2010–2025) and the Exceptional Winter 2016–17 Pollution Episode: Implications for a Uranium/Arsenic Exposure Event حسب Thomas Clemens Carmine (19756929)

"…<br><br><b>Missing-Data Handling & Imputation:</b></p><p dir="ltr">The following sequential steps were applied to create a complete and consistent daily time series suitable for analysis (presented in the Imputed_AP_Data_Zurich_2010-25 sheet), particularly addressing the absence of routine PM₂.₅ measurements prior to January 2016. The full implementation is detailed in the accompanying Python script (Imputation_Air_Pollutants_NABEL.py). …"

MSc Personalised Medicine at Ulster University حسب Steven Watterson (100045)

"…</b> Introducing computational approaches to studying genes, proteins or metabolites, this module teaches Python coding, data analysis and how to work with the databases that support data analysis.…"

Building footprtints from 1970s Hexagon spy satellite images for four global urban growth hotspots حسب Franz Schug (10165159)

"…</p> <p><strong>Processing environment</strong></p> <p>This research has been conducted using Python for ESRI ArcGIS Pro version 3.2.1 and the TensorFlow package. …"

<b>Challenges and Strategies for the Management of Quality-Oriented Education Bases in Universities under Informatization Background</b> حسب Yang Yanxi (21571568)

"…Final codes, together with basic demographic attributes supplied by the institutions’ HR offices, were exported to Excel and cleaned in Python 3.10 using pandas 2.2.1 and numpy 1.26. …"

<b>Engineered Muscle-Derived Extracellular Vesicles Boost Insulin Sensitivity and Glucose Regulation</b> حسب Hagit Shoyhet (21090650)

"…</p><p dir="ltr"><b>miR_path_target_enrichment.csv</b></p><p dir="ltr"><b>Description:</b> KEGG pathway enrichment analysis results of shared mRNA targets of miRNAs miR-16-5p, miR-122-5p and miR-486-5p ranked by their interaction score defined in our paper. this includes the pathway name, the enrichment p-value, number of genes found in the term and number of miRNAs targeting these genes</p><p dir="ltr"><b>Code/software</b></p><p dir="ltr">Data were analyzed using R-V4.0.4, Python-V3.9.2 and GraphPad software. miRNA analyses were run in R-V4.0.4 Differential expression analysis was conducted using the “DEseq2” package and corrected for multiple hypotheses by FDR. …"

Chromosomal rearrangements among clade A pathogenic <i>Cryptococcus</i> species. حسب Marco A. Coelho (7353659)

"…<p>(A) Synteny comparisons between <i>C. neoformans</i> strain 125.91 (reference) and representative strains from 7 other clade A species (8 species total). …"

PepENS حسب Abel Chandra (16854753)

"…<br><br>Download and Use</p><p dir="ltr">The codes for Datasets 1 and 2 are found in the respective folders of this repository.…"

Core data حسب Baoqiang Chen (21099509)

"…</p><p><br></p><p dir="ltr">For the 5′ UTR library, we developed a Python script to extract sequences and Unique Molecular Identifiers (UMIs) from the FASTQ files. …"