A high-performance and highly reusable fast multipole method library and its application to solvation energy calculations at virus-scale by Tingyu Wang (12342757)

“…It empowers researchers to compute solvation energy at the scale of viruses interactively via easy-to-use Python interfaces. The 1/N convergence rate observed in mesh-refinement studies confirms code correctness, and result comparison with other trusted PB software shows agreement using a wide range of proteins.Performance results report timings and breakdowns with between 8,000 and 2 million boundary elements and confirm the linear complexity in both time and space. …”

Data_Sheet_1_Mitigating Computer Limitations in Replicating Numerical Simulations of a Neural Network Model With Hodgkin-Huxley-Type Neurons.pdf by Paulo H. Lopes (12533545)

“…The original source code in C/C++ was carefully refactored to mitigate the lack of replicability; moreover, it was re-implemented to other programming languages/software (XPP/XPPAUT, Python and Matlab) and executed under two operating systems (Windows and Linux). …”

MCCN Case Study 3 - Select optimal survey locality by Donald Hobern (21435904)

“…</p><p dir="ltr">The dataset contains input files for the case study (source_data), RO-Crate metadata (ro-crate-metadata.json), results from the case study (results), and Jupyter Notebook (MCCN-CASE 3.ipynb)</p><h4><b>Research Activity Identifier (RAiD)</b></h4><p dir="ltr">RAiD: https://doi.org/10.26292/8679d473</p><h4><b>Case Studies</b></h4><p dir="ltr">This repository contains code and sample data for the following case studies. …”

<i>PyRates</i> software structure. by Richard Gast (8129451)

Overview of generalized weighted averages. by Nobuhito Manome (8882084)

“…GWA-UCB1 outperformed G-UCB1, UCB1-Tuned, and Thompson sampling in most problem settings and can be useful in many situations. The code is available at <a href="https://github.com/manome/python-mab" target="_blank">https://github.com/manome/python-mab</a>.…”

Genomic Surveillance of Pemivibart (VYD2311) Escape-Associated Mutations in SARS-CoV-2: December 2025 BioSamples (n=2) by Tahir Bhatti (20961974)

“…Full source code and version details are available upon request.…”

Advancing Solar Magnetic Field Modeling by Carlos António (21257432)

“…<br><br>We developed a significantly faster Python code built upon a functional optimization framework previously proposed and implemented by our team. …”