Genomic Surveillance of Pemivibart (VYD2311) Escape-Associated Mutations in SARS-CoV-2: December 2025 BioSamples (n=2) by Tahir Bhatti (20961974)

“…</p><p dir="ltr"><b>Note:</b></p><p dir="ltr">Analysis was performed using a custom Python-based bioinformatics pipeline developed for <b>high-throughput surveillance of pemivibart (VYD2311) escape mutations in SARS-CoV-2</b>. …”

Attention and Cognitive Workload by Rui Varandas (11900993)

“…</p><p dir="ltr">The data for subject 2 do not include the 2nd part of the acquisition (python task) because the equipment stopped acquiring; subject 3 has the 1st (N-Back task and mental subtraction) and the 2nd part (python tutorial) together in the <code>First part</code> folder (file <code>D1_S3_PB_description.json</code> indicates the start and end of each task); subject 4 only has the mental subtraction task in the 1st part acquisition and in subject 8, the subtraction task data is included in the 2nd part acquisition, along with python task.…”

Audio Datasets of belt conveyor rollers in mines by Juan Liu (19687435)

“…</li><li><b>Python Code: </b>This code validates the accuracy and usability of the audio feature datasets in real-time monitoring of belt conveyor roller operational states.…”

GeoGraphNetworks: Shapefile-Derived Datasets for Accurate and Scalable Graphical Representations by Harish Sharma (18881935)

“…The rail line infrastructure of the USA is represented as a single network that covers the entire country and includes connectivity to Canada. …”

Missing and Unaccounted-for People in Mexico (1960s–2025) by Montserrat Mora (20430644)

“…</li><li><b>Requirements File:</b> A <code>requirements.txt</code> file listing the necessary Python libraries to run the script seamlessly.…”

Physiotherapist-Assisted Wrist Movement Protocol for EEG-Based Corticokinematic Coherence Assessment by Fanni Kovács (21733838)

“…</li></ol><h4><b>Movement File Structure</b></h4><p dir="ltr">Each entry contains:</p><ul><li><code><strong>time</strong></code>: a 32-bit unsigned integer indicating the timestamp in milliseconds,</li><li><code><strong>x</strong></code>, <code><strong>y</strong></code>, <code><strong>z</strong></code>: 16-bit signed integers representing acceleration along the respective axes,</li><li><code><strong>trigger</strong></code>: an 8-bit unsigned integer used to mark event-related triggers for synchronization with the EEG data (e.g., movement onset).…”

Phylogenomics of aquatic bacteria by Krzysztof Jurdzinski (12519700)

“…</p> <p><br></p> <p>all_MSG_ids.txt - a text file with names of all the representative MAGs within all the MSG pairs.</p> <p><br></p> <p>filter_MSGs.py - a Python script to extract the MAGs from within the MSGs (given all_MSG_ids.txt) from a folder containing a larger set of sequences.…”

Multisession fNIRS-EEG data of Post-Stroke Motor Recovery: Recordings During Intact and Paretic Hand Movements by Aleksandra Medvedeva (21221383)

“…The fNIRS .snirf files are accompanied by event files as .txt tables, containing arrays of event timestamps and corresponding event codes. The code for signal reading, preprocessing, and epoching is provided with the dataset in the “Preprocessing” file. …”

Supporting data for "Optimisation of Trust in Collaborative Human-Machine Intelligence in Construction" by Hao Chen (9696848)

“…<p dir="ltr">The dataset comprises five distinct folders, each corresponding to a specific chapter of the study. The first folder contains Scopus-derived data alongside analytical results that substantiate the figures presented in Chapter 1. …”

Digital Twin for Chemical Sciences by Jin Qian (19339035)

“…The procedure for generating data in Figure 3 can be found in the demo notebook in Supplementary Code. The procedure for generating data of Figure 4 has been uploaded in fig4_figshare.zip file. …”

Sonification of Warming Stripes by Christopher Harrison (9448751)

“…The sonification was produced using the STRAUSS sonification Python package.</p><p dir="ltr">Here we release:<br>1. …”

Explained variance ration of the PCA algorithm. by Abeer Aljohani (18497914)

“…The efficiency and accuracy of the proposed method is presented in details. All our simulation is performed in computation softwares, Matlab and Python. …”

Supplementary file 1_ParaDeep: sequence-based deep learning for residue-level paratope prediction using chain-aware BiLSTM-CNN models.docx by Piyachat Udomwong (22563212)

“…The implementation is freely available at https://github.com/PiyachatU/ParaDeep, with Python (PyTorch) code and a Google Colab interface for ease of use.…”

Supplementary material for "Euler inversion: Locating sources of potential-field data through inversion of Euler's homogeneity equation" by Leonardo Uieda (97471)

“…</p><h2>License</h2><p dir="ltr">All Python source code (including <code>.py</code> and <code>.ipynb</code> files) is made available under the MIT license. …”

MEG Dataset and Analysis Scripts for “The Effects of Task Similarity During Representation Learning in Brains and Neural Networks” by Nicholas Menghi (22426174)

“…</p><h3><b>Contents</b></h3><ul><li><b>MEG data</b> (results of the correlation between empirical and model matrices at different dimensionalities and domains)</li><li><b>Behavioral data</b> (behavioural accuracy performance: "Spatual Source Data")</li><li><b>Analysis script</b></li><li><b>Python package </b>developed to help with retrieving and computing simple operations</li></ul><h3><b>Data format</b></h3><p dir="ltr">Data are organized according to a structured folder layout (see <code>README.md</code> in the repository) and include:</p><ul><li><code>npy</code> MEG files (numpy)</li><li><code>.csv</code> behavioral files</li><li>Python scripts using MNE-Python for statistical analysis and visualization</li></ul><h3><b>Usage</b></h3><p dir="ltr">The provided scripts reproduce the statistical tests and figures presented in the manuscript. …”

Sonification of Growing Black Hole by Rose Shepherd (20328444)

“…We used the open source Python package STRAUSS to produce the sonification (Trayford and Harrison 2023). …”

SRL OF TIM by Jefferson Rodrigo Speck (21510347)

“…</li><li><code><strong>plot_scripts/</strong></code>: Includes data files and Python scripts used to generate the visualizations presented in the review (e.g., bar charts, pie charts, distribution graphs).…”

Mechanomics Code - JVT by Carlo Vittorio Cannistraci (5854046)

“…</p><p dir="ltr"><b>What is containing this repository</b></p><p dir="ltr">Data, MATLAB, R and Python code files in respective dedicated folders, specifically:</p><ul><li>Data: the 9 datasets that you need to run either of the MATLAB, R or Python scripts.…”

<b>Rethinking neighbourhood boundaries for urban planning: A data-driven framework for perception-based delineation</b> by Shubham Pawar (22471285)

“…</p><p dir="ltr"><b>Input:</b></p><ul><li><code>svi_module/svi_data/svi_info.csv</code> - Image metadata from Step 1</li><li><code>perception_module/trained_models/</code> - Pre-trained models</li></ul><p dir="ltr"><b>Command:</b></p><pre><pre>python -m perception_module.pred \<br> --model-weights .…”

Minami_etal_2025 by Keiichi Mochida (4670800)

“…<h2>Code files related to Minami et al (2025)</h2><p dir="ltr">accession_plot.py:Python script used to generate Fig4a.…”