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121
Automatic data reduction for the typical astronomer
Published 2025“…PypeIt has been developed by a small team of astronomers with two leading philosophies: (1) build instrument-agnostic code to serve nearly any spectrograph; (2) implement algorithms that achieve Poisson-level sky-subtraction with minimal systematics to yield precisely calibrated spectra with a meaningful noise model. …”
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122
Bayesian Changepoint Detection via Logistic Regression and the Topological Analysis of Image Series
Published 2025“…The method also successfully recovers the location and nature of changes in more traditional changepoint tasks. An implementation of our method is available in the Python package bclr.…”
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123
Concurrent spin squeezing and field tracking with machine learning
Published 2025“…Randomly signal generating codeb.Deep learning codec.data pre-processing code The network is implemented using the torch 1.13.1 framework and CUDA 11.6 on Python 3.8.8. …”
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124
Neural-Signal Tokenization and Real-Time Contextual Foundation Modelling for Sovereign-Scale AGI Systems
Published 2025“…</p><p dir="ltr"><b>Availability</b> — The repository includes LaTeX sources, trained model checkpoints, Python/PyTorch code, and synthetic datasets. Data are released under a Creative Commons Attribution-NonCommercial-4.0 (CC BY-NC 4.0) license; code under MIT License.…”
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125
Gene Editing using Transformer Architecture
Published 2025“…., the H-Bot sequence), it facilitates on-screen gene editing, enabling targeted mutations or the insertion of desired genes. Implementation requires Python and deep learning frameworks like TensorFlow or PyTorch, with optional use of Biopython for genetic sequence handling. …”
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126
Supervised Classification of Burned Areas Using Spectral Reflectance and Machine Learning
Published 2025“…Six Python scripts are provided, each implementing a distinct machine learning algorithm—Random Forest, k-Nearest Neighbors (k-NN), Multi-Layer Perceptron (MLP), Decision Tree, Naïve Bayes, and Logistic Regression. …”
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127
Numerical analysis and modeling of water quality indicators in the Ribeirão João Leite reservoir (Goiás, Brazil)
Published 2025“…The code implements a statistical–computational workflow for parameter selection (VIF, Bartlett and KMO tests, PCA and FA with <i>varimax</i>) and then trains and evaluates machine-learning models to predict three key physico-chemical indicators: turbidity, true color, and total iron. …”
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128
Data from: Circadian activity predicts breeding phenology in the Asian burying beetle <i>Nicrophorus nepalensis</i>
Published 2025“…</p><p dir="ltr">The dataset includes:</p><ol><li>Raw locomotor activity measurements (.txt files) with 1-minute resolution</li><li>Breeding experiment data (Pair_breeding.csv) documenting nest IDs, population sources, photoperiod treatments, and breeding success</li><li>Activity measurement metadata (Loc_metadataset.csv) containing detailed experimental parameters and daily activity metrics extracted using tsfresh</li></ol><p dir="ltr">The repository also includes complete analysis pipelines implemented in both Python (3.8.8) and R (4.3.1), featuring:</p><ul><li>Data preprocessing and machine learning model development</li><li>Statistical analyses</li><li>Visualization scripts for generating Shapley plots, activity pattern plots, and other figures</li></ul><p></p>…”
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129
Void-Center Galaxies and the Gravity of Probability Framework: Pre-DESI Consistency with VGS 12 and NGC 6789
Published 2025“…<br><br><br><b>ORCID ID: https://orcid.org/0009-0009-0793-8089</b><br></p><p dir="ltr"><b>Code Availability:</b></p><p dir="ltr"><b>All Python tools used for GoP simulations and predictions are available at:</b></p><p dir="ltr"><b>https://github.com/Jwaters290/GoP-Probabilistic-Curvature</b><br><br>The Gravity of Probability framework is implemented in this public Python codebase that reproduces all published GoP predictions from preexisting DESI data, using a single fixed set of global parameters. …”
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130
Table 1_Analysis of distribution equilibrium and influencing factors for older adult meal service facilities in mainland China.xlsx
Published 2025“…Objective<p>Analyze the distribution equilibrium of older adult meal service facilities in mainland China and explore the factors influencing their distribution.</p>Methods<p>Use Python to obtain data on older adult meal service facilities, and analyze the equity of older adult meal services using descriptive statistics, the Lorenz curve, the Gini coefficient, and the Spatial Mismatch Index (SMI). …”
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131
Genomic Surveillance of Pemivibart (VYD2311) Escape-Associated Mutations in SARS-CoV-2: December 2025 BioSamples (n=2)
Published 2025“…Full source code and version details are available upon request.…”
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132
Hippocampal and cortical activity reflect early hyperexcitability in an Alzheimer's mouse model
Published 2025“…</p><p dir="ltr">All data are available upon request. The standalone Python implementation of the fE/I algorithm is available under a CC-BY-NC-SA license at <a href="https://github.com/arthur-ervin/crosci" target="_blank">https://github.com/arthur-ervin/crosci</a>. …”
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133
Methodological Approach Based on Structural Parameters, Vibrational Frequencies, and MMFF94 Bond Charge Increments for Platinum-Based Compounds
Published 2025“…The developed bci optimization tool, based on MMFF94, was implemented using a Python code made available at https://github.com/molmodcs/bci_solver. …”
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134
Advancing Solar Magnetic Field Modeling
Published 2025“…<br><br>We developed a significantly faster Python code built upon a functional optimization framework previously proposed and implemented by our team. …”
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135
Data files accompanying our PLoS One publication
Published 2025“…The videos were digitized and the positional data were saved in .xlsx or .csv format, respectively. The python codes contain the numerical implementations of our mathematical models.…”
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136
Contrast enhancement of digital images using dragonfly algorithm
Published 2024“…Comparisons with state-of-art methods ensure the superiority of the proposed algorithm. The Python implementation of the proposed approach is available in this <a href="https://github.com/somnath796/DA_contrast_enhancement" target="_blank">Github repository</a>.…”
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137
Cathode carbon block material parameters [14].
Published 2025“…A random aggregate model was implemented in Python and imported into finite element software to simulate sodium diffusion using Fick’s second law. …”
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138
Sodium concentration distribution cloud map.
Published 2025“…A random aggregate model was implemented in Python and imported into finite element software to simulate sodium diffusion using Fick’s second law. …”
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139
Sodium binding coefficient R.
Published 2025“…A random aggregate model was implemented in Python and imported into finite element software to simulate sodium diffusion using Fick’s second law. …”
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140
Supplementary Data: Biodiversity and Energy System Planning - Queensland 2025
Published 2025“…</p><h2>Software and Spatial Resolution</h2><p dir="ltr">The VRE siting model is implemented using Python and relies heavily on ArcGIS for comprehensive spatial data handling and analysis.…”