Phylogenomics of aquatic bacteria حسب Krzysztof Jurdzinski (12519700)

"…It contains names of the MAGs in format {data source 2-letter code}_{name of the MAG as in  ENA}, the biome of origin and taxonomic classification. …"

Can Large Language Models Replace Human Subjects? A Large-Scale Replication of Scenario-Based Experiments in Psychology and Management حسب Ning Li (18882138)

"…This repository contains data and code for a research project replicating human psychological experiments using Large Language Models (LLMs). …"

<b>VISION — an open-source software for automated multi-dimensional image analysis of cellular biophysics</b> حسب Erdinc Sezgin (10714689)

"…However, the few open-source packages available for processing of spectral images are limited in scope. Here, we present VISION, a stand-alone software based on Python for spectral analysis with improved applicability. …"

2024 HUD Point in Time Count Data by State and CoC with Serious Mental Illness and Chronic Substance Use Counts حسب Benjamin Gorman (21648794)

"…</p><p dir="ltr">HUD PIT Count reports for states, Washington, DC, and the 384 CoCs were systematically downloaded from the HUD Exchange website using a Python script developed using Cursor software. Cursor uses large language models, especially Claude Sonnet 4 (Anthropic), to generate code. …"

<i>In vivo</i> identification of <i>Toxoplasma gondii</i> antigenic proteins and <i>in silico</i> study of their polymorphism. حسب Julie DENIS (19696753)

"…The filtered data is presented in the <b>Filtered_Variants</b> document.…"

The artifacts and data for the paper "DD4AV: Detecting Atomicity Violations in Interrupt-Driven Programs with Guided Concolic Execution and Filtering" (OOPSLA 2025) حسب zixuan yuan (17602152)

"…</li><li><ul><li><code><strong>DBDS</strong></code>: The code implements our proposed dynamic scheduling execution method, which systematically explores task interleaving for atomicity violation detection, enhanced by an effective prefix-directed strategy.…"

<b>InterHub: A Naturalistic Trajectory Dataset with Dense Interaction for Autonomous Driving</b> حسب Xiyan Jiang (20320758)

"…</b></li></ul><p dir="ltr">The Python codes used to process and analyze the dataset can be found at <a href="https://github.com/zxc-tju/InterHub" rel="noreferrer" target="_blank">https://github.com/zxc-tju/InterHub</a>. …"

CNG-ARCO-RADAR.pdf حسب Alfonso Ladino (21447002)

"…This approach uses a suite of Python libraries, including Xarray (Xarray-Datatree), Xradar, and Zarr, to implement a hierarchical tree-like data model. …"

Pteredactyl: Patient Clinical Free-Text Redaction Software حسب Matt Stammers (14037525)

"…</p><p dir="ltr">This is why we created <a href="https://pypi.org/project/pteredactyl/" rel="noopener noreferrer" target="_blank">Pteredactyl</a> - a python module to help with redaction of clinical free text.…"

Streamlining a National Flood Assessment using a Flow Scheduler حسب eRNZ Admin (6438486)

Continental-scale impact of bomb radiocarbon affects historical fossil fuel carbon dioxide reconstruction حسب Jing Li (21564146)

"…</p><p dir="ltr"><b>Source CO2 data (Mauna Loa).xlsx:</b> CO2 data from Mauna Loa (MLO) which belong to Global Greenhouse Gas Reference Network were used in this study as the background CO2 levels, which available from 1970 to 2020 (https://gml.noaa.gov/ccgg/trends/).14</p><p dir="ltr"><b>Statistical analysis code and data (SI table 1-2,4) folder: </b>It contains the python code, source data and results that conducted the statistical analysis. …"

<b>Challenges and Strategies for the Management of Quality-Oriented Education Bases in Universities under Informatization Background</b> حسب Yang Yanxi (21571568)

"…Final codes, together with basic demographic attributes supplied by the institutions’ HR offices, were exported to Excel and cleaned in Python 3.10 using pandas 2.2.1 and numpy 1.26. …"

<b>AutoMated tool for Antimicrobial resistance Surveillance System version 3.1 (AMASS3.1)</b> حسب Chalida Rangsiwutisak (10501496)

"…;</li><li><i>Enterococcus</i> <i>faecalis</i> and <i>E. faecium</i> have been explicitly included in the pathogens under the survey (while <i>Enterococcus</i> spp. are used in the AMASS version 2.0);</li><li>We have added a few antibiotics in the list of antibiotics for a few pathogens under the survey;</li></ol><p dir="ltr">Technical aspects</p><ol><li>We have added a configuration for “Annex C: Cluster signals” in Configuration.xlsx;</li><li>We have improved the algorithm to support more several date formats;</li><li>We have improved the algorithm to translate data files;</li><li>We have improved Data_verification_logfile report to present local languages of the variable names and values (according to how they were recorded in the data files) in the report;</li><li>We have improved Annex B: Data indicators to support a larger data set;</li><li>We have used only Python rather than R + Python (as used in the AMASSv2.0);</li><li>We have set a default config for infection origin stratification by allowing a specimen collected two calendar days before the hospital admission date and one day after the hospital discharge date into consideration. …"

MCCN Case Study 1 - Evaluate impact from environmental events/pressures حسب Donald Hobern (21435904)

"…filters=eyJTVEFURSI6WyJBQ1QiXX0=&location=-35.437128,149.203518,11.00</a></li><li><b>caladenia_act.csv</b> - Distribution records for orchids in the genus <i>Caladenia</i> between 1990 and present from the ALA in CSV format: <a href="https://doi.org/10.26197/ala.1e501311-7077-403b-a743-59e096068fa0" target="_blank">https://doi.org/10.26197/ala.1e501311-7077-403b-a743-59e096068fa0</a></li></ul><h4><b>Dependencies</b></h4><ul><li>This notebook requires Python 3.10 or higher</li><li>Install relevant Python libraries with: <b>pip install mccn-engine rocrate</b></li><li>Installing mccn-engine will install other dependencies</li></ul><h4><b>Overview</b></h4><ol><li>Group orchid species records by species</li><li>Prepare STAC metadata records for each data source (separate records for the distribution data for each orchid species)</li><li>Load data cube</li><li>Mask orchid distribution records to boundaries of ACT</li><li>Calculate the proportion of distribution records for each species occurring inside and outside protected areas</li><li>Calculate the proportion of distribution records for each species occurring in areas with each class of vegetation cover</li><li>Report the apparent affinity between each species and protected areas and between each species and different classes of vegetation cover</li></ol><h4><b>Notes</b></h4><ul><li>No attempt is made here to compensate for underlying bias in the areas where observers have spent time recording orchids. …"

ReaxANA: Analysis of Reactive Dynamics Trajectories for Reaction Network Generation حسب Hong Zhu (109912)

"…To address this challenge, we introduce a graph algorithm-based explicit denoising approach that defines user-controlled operations for removing oscillatory reaction patterns, including combination and separation, isomerization, and node contraction. This algorithm is implemented in ReaxANA, a parallel Python package designed to extract reaction mechanisms from both heterogeneous and homogeneous reactive MD trajectories. …"

ReaxANA: Analysis of Reactive Dynamics Trajectories for Reaction Network Generation حسب Hong Zhu (109912)

"…To address this challenge, we introduce a graph algorithm-based explicit denoising approach that defines user-controlled operations for removing oscillatory reaction patterns, including combination and separation, isomerization, and node contraction. This algorithm is implemented in ReaxANA, a parallel Python package designed to extract reaction mechanisms from both heterogeneous and homogeneous reactive MD trajectories. …"

Mapping Policy Coherence in National UK Food Systems (2008– 2024): Analysing the Integration of Climate Change Mitigation and Adaptation Strategies, LEAP 2025 conference, Oxford حسب Ronja Teschner (20974180)

"…</p><p dir="ltr">Data Screening inclusion criteria followed the Food Systems Countdown Initiative (FSCI).2</p><p><br></p><p dir="ltr">diets, nutrition and health</p><p dir="ltr">diet quality, food security, food environments, policies affecting</p><p dir="ltr">food environments</p><p dir="ltr">environment and climate</p><p dir="ltr">land use, greenhouse gas emissions, water use, pollution, biosphere integrity</p><p dir="ltr">livelihoods, poverty, and equity</p><p dir="ltr">poverty and income, employment, social protection, rights</p><p dir="ltr">governance</p><p dir="ltr">shared vision, strategic planning and policies, effective implementation, accountability</p><p dir="ltr">resilience and sustainability</p><p dir="ltr">exposure to shocks, resilience capacities, agrobiodiversity, food security stability</p><p><br></p><p dir="ltr">Findings</p><p dir="ltr">o N=157 policy documents integrate climate change considerations.…"

Data Sheet 1_COCαDA - a fast and scalable algorithm for interatomic contact detection in proteins using Cα distance matrices.pdf حسب Rafael Pereira Lemos (9104911)

"…Here, we introduce COCαDA (COntact search pruning by Cα Distance Analysis), a Python-based command-line tool for improving search pruning in large-scale interatomic protein contact analysis using alpha-carbon (Cα) distance matrices. …"

MSc Personalised Medicine at Ulster University حسب Steven Watterson (100045)

"…</b> Introducing computational approaches to studying genes, proteins or metabolites, this module teaches Python coding, data analysis and how to work with the databases that support data analysis.…"

Wolframin Degradome Foundation Atlas حسب Axel Petzold (7076261)

"…To extract, use the following command in a bash terminal:</p><pre><pre>tar -xvJf Wolframin_Degradome_Foundation_Atlas_v3.tar.gz<br></pre></pre><p dir="ltr"><b>Codes</b><br>Dataset generation is fully reproducible using three open-source tools: <b>Python, BLAST, and SAS</b>. …"