Elements: Streaming Molecular Dynamics Simulation Trajectories for Direct Analysis – Applications to Sub-Picosecond Dynamics in Microsecond Simulations by Matthias Heyden (17087794)

“…This eliminates the need for intermediate storage and allows immediate access to high-frequency fluctuations and vibrational signatures that would otherwise be inaccessible. We have implemented this streaming interface in the MD engines NAMD, LAMMPS, and GROMACS</p><p dir="ltr">On the client side, we developed the IMDClient Python package which receives the streamed data, stores into a custom buffer, and provides it to external tools as NumPy arrays, facilitating integration with scientific computing workflows. …”

<b>Code and derived data for</b><b>Training Sample Location Matters: Accuracy Impacts in LULC Classification</b> by Pajtim Zariqi (22155799)

“…<p dir="ltr">This repository contains the analysis code and derived outputs for the study <i>“Training Sample Location Matters: Accuracy Impacts in LULC Classification”</i>. The workflow was implemented in Google Earth Engine (JavaScript API) and replicated in Python notebooks (Jupyter/Kaggle) for reproducibility.…”

Keyhole Imagery Global Coverage Dataset (1960–1984) by Hao Li (20223762)

“…</li><li><b>Code</b>: Python scripts implementing the three-step workflow (imagery classification, global grid generation, and point-based property calculation).…”

<b>Data Availability</b> by Bonyad Ahmadi (20750327)

“…</p><p dir="ltr">python scripts documenting the implementation of the Mixture Density Network (MDN) algorithm, including hyperparameter tuning and uncertainty quantification.…”

<b>Data Availability</b> by Bonyad Ahmadi (20750327)

“…</p><p dir="ltr">python scripts documenting the implementation of the Mixture Density Network (MDN) algorithm, including hyperparameter tuning and uncertainty quantification.…”

Artifact for the IJCAI 2024 paper "Solving Long-run Average Reward Robust MDPs via Stochastic Games" by Krishnendu Chatterjee (15367413)

“…<br></pre></pre><h2>Structure and How to run</h2><p dir="ltr">There are four Python files in the repository.</p><pre><pre>(i) `StrategyIteration.py` is the backend code, containing the implementation of the RPPI algorithm described in the paper.…”

Reproducible Code and Data for figures by Bonyad Ahmadi (20750327)

“…</i></p><p dir="ltr">It contains:</p><p dir="ltr">✅ <b>Python Code</b> – Scripts used for data preprocessing, and visualization.…”

Code and data for reproducing the results in the original paper of DML-Geo by Pengfei CHEN (8059976)

“…</p><p dir="ltr"><b>rslt.pkl</b>: A pickled Python object that stores the explainer based on geoshapley for dataset 1.…”

The artifacts and data for the paper "DD4AV: Detecting Atomicity Violations in Interrupt-Driven Programs with Guided Concolic Execution and Filtering" (OOPSLA 2025) by zixuan yuan (17602152)

“…</li><li><code><strong>SVF</strong></code>: The third-party library project SVF provides interprocedural dependence analysis for LLVM-based languages.</li><li><code><strong>wllvm</strong></code>: The third-party library project WLLVM provides tools for building whole-program LLVM bitcode files from unmodified C or C++ source packages.…”

<b>DeepB3Pred</b> by Saleh Musleh (22263718)

“…MCTD is the implementation of composition-transition and distribution, and GSFE is the implementation of graphical and statistical-based feature engineering.…”

DeepB3Pred - code by Saleh Musleh (22263718)

“…MCTD is the implementation of composition-transition and distribution, and GSFE is the implementation of graphical and statistical-based feature engineering.…”

DeepB3Pred_source_code by Muhammad Arif (17012472)

“…Testing dataset TS_BB includes BBB_pos and BBB_neg testing samples</p><p dir="ltr">**Feature_Extraction: CPSR is the implementation of component protein sequence representation. mctd is the implementation of composition-transition and distribution, GSFE is the implementation of Graphical and statistical-based feature engineering.…”

SEPARATE Code Repository by Gyuri Kim (21424973)

“…<p dir="ltr">Python implementation of the SEPARATE, which enables three-dimensional multiplexed fluorescence imaging by pairing proteins based on their spatial expression patterns and computationally unmixing signals using deep learning.…”

Data and code for: Automatic fish scale analysis by Christian Vogelmann (21646472)

“…<p dir="ltr">This dataset accompanies the publication:<br><b>"Automatic fish scale analysis: age determination, annuli and circuli detection, length and weight back-calculation of coregonid scales"</b><br></p><p dir="ltr">It provides all essential data and statistical outputs used for the <b>verification and validation</b> of the <i>Coregon Analyzer</i> – a Python-based algorithm for automated biometric fish scale measurement.…”

Hippocampal and cortical activity reflect early hyperexcitability in an Alzheimer's mouse model by Marina Diachenko (19739092)

“…</p><p dir="ltr">All data are available upon request. The standalone Python implementation of the fE/I algorithm is available under a CC-BY-NC-SA license at <a href="https://github.com/arthur-ervin/crosci" target="_blank">https://github.com/arthur-ervin/crosci</a>. …”

Ambient Air Pollutant Dynamics (2010–2025) and the Exceptional Winter 2016–17 Pollution Episode: Implications for a Uranium/Arsenic Exposure Event by Thomas Clemens Carmine (19756929)

“…The full implementation is detailed in the accompanying Python script (Imputation_Air_Pollutants_NABEL.py). …”

software code of NeoDesign by Wenqian Yu (19730101)

“…<h2>Implementation and Dependencies</h2><p dir="ltr">neoDesign was developed with python (recommend>3.9) and shell (bash) language. …”

Supplementary Material by Aris Shahbazian (22464325)

“…The supplementary material includes the full Python-based implementation of the AI-driven optimization framework described in the manuscript. …”

Simulation Code and Raw Data by Melih Özkurt (22278520)

“…<p dir="ltr">Reproducible code (Python) implementing a symmetrized split-step Fourier method (SSFM), with configuration files for all scans. …”

Mapping Policy Coherence in National UK Food Systems (2008– 2024): Analysing the Integration of Climate Change Mitigation and Adaptation Strategies, LEAP 2025 conference, Oxford by Ronja Teschner (20974180)

“…Van Rossum, G.; Drake, F. L. Python 3 Reference Manual, 2009.</p></td></tr></table><p></p>…”