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files implementation » time implementation (Expand Search), pilot implementation (Expand Search), assess implementation (Expand Search)
code » core (Expand Search)
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Python implementation of the Trajectory Adaptive Multilevel Sampling algorithm for rare events and improvements
Published 2021“…</div><div><br></div><div>The `TAMS` folder contains the necessary files to run the TAMS algorithm. The `main.py` file is the file to be executed using a command of the type `python main.py`. …”
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+5 Million Python & Bash Programming Submissions for 5 Courses & Grades for Computer-Based Exams over 3 academic years.
Published 2020“…In this work we explore different mechanisms to represent students’ code to predict its correctness and to better analyze students’ progress using their interactions which can be exploited to provide effective feedback and support better recommendations. …”
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Pseudo-code of the main simulation loop.
Published 2024“…N is a unit representing the copy number. This pseudo-code was adapted to show the actual computations in a more comprehensible way. …”
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Genomic view of archaeal and bacterial diversity in skeleton of coral Porites lutea and Isopora palifera
Published 2022“…From inner to outer ring, Innermost circle represents MAGs color coded at bacterial class level. …”
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Building a Federated Data Catalog with Client Implementations - Meeting Data Where It is
Published 2023“…</p> <p>This combination of a <strong>auto-refreshing</strong> catalog paired with <strong>multi language implementations</strong> (R and Python), allowed the catalog to grow its data holdings from 11 to over 2,000 data providers and share the catalog as JSON and parquet files from a <em>github.io</em> page. …”
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Example of loading and running BNGL model in MCell4.
Published 2024“…<p>Python code for an MCell4 model that will implement loading of the BNGL file shown in <a href="http://www.ploscompbiol.org/article/info:doi/10.1371/journal.pcbi.1011800#pcbi.1011800.g010" target="_blank">Fig 10</a> (referenced as subsystem.bngl). …”
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WEDAP: A Python Package for Streamlined Plotting of Molecular Simulation Data
Published 2024“…Here, we present the WEDAP Python package for simplifying the analysis of data generated from either conventional MD simulations or the weighted ensemble (WE) path sampling method, as implemented in the widely used WESTPA software package. …”
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A Python Package for the Localization of Protein Modifications in Mass Spectrometry Data
Published 2022“…Here we describe pyAscore, an efficient and versatile implementation of the Ascore algorithm in Python for scoring the localization of user defined PTMs in data dependent mass spectrometry. pyAscore can be used from the command line or imported into Python scripts and accepts standard file formats from popular software tools used in bottom-up proteomics. …”
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City-level GDP estimates for China under alternative pathways from 2020 to 2100-python code
Published 2025“…The dataset is complemented by processing code and raw input data in the "Python_Code" directory to ensure full reproducibility. …”
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Presentation_1_Rule-based semi-automated tools for mapping seabed morphology from bathymetry data.pdf
Published 2023“…The tools have a graphical user interface and were developed using Python scripts under the widely-adopted proprietary ArcGIS Pro platform. …”
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Python code and Excel data for statistical and machine learning models developed to investigate the efficiency of nutrient recovery by struvite precipitation.
Published 2024“…The inventory data embedded within the Python code represents the digestate of various organic feedstocks.…”
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