Compartmental BNGL implementation of the SNARE complex model. by Adam Husar (18437351)

Subjects:

Python code to instantiate the class Fractal. by Leonardo Costa Ribeiro (10439243)

PTPC-UHT bounce by David Parry (22169299)

“…<br>It contains the full Python implementation of the PTPC bounce model (<code>PTPC_UHT_bounce.py</code>) and representative outputs used to generate the figures in the paper. …”

Recommended structure of a standard MCell4 model. by Adam Husar (18437351)

Subjects:

Total epithelial chloride fluxes for the W-PCT-E model. by Leyla Noroozbabaee (14100772)

DataSheet_1_AirSeaFluxCode: Open-source software for calculating turbulent air-sea fluxes from meteorological parameters.pdf by Stavroula Biri (14571707)

“…In this paper, we present a Python 3.6 (or higher) open-source software package “AirSeaFluxCode” for the computation of the heat (latent and sensible) and momentum fluxes. …”

Heat-map in this figure represented as row-normalized <i>k</i>-mer counting distribution. by Solomon Shiferaw Beyene (9143178)

Python file of the computational framework. by Benoit Haut (9753029)

SciPy2024: Facilitating scientific investigations from long-tail data with Python by Deborah Khider (4673140)

“…</p><p><br></p><p dir="ltr">Although the Pandas extension and its incorporation into Pyleoclim represents a major stepping stone to allow scientists in these domains to make use of more open science code, work remains for interoperability with other open source libraries such as Matplotlib, Seaborn, Scikit-learn, and Scipy. …”

An example Python input file for the CA4 binder design. by Jakub Lála (17136205)

Parallel pipeline elements. by Ramona Leenings (11167294)

Parallel plot showing hyperparameter exploration. by Ramona Leenings (11167294)

Representative schematic of the geometric configuration used for a 120 electrode MEA. by Christopher S. Dunham (12239618)

Python implementation of the Trajectory Adaptive Multilevel Sampling algorithm for rare events and improvements by Pascal Wang (10130612)

“…</div><div><br></div><div>The `TAMS` folder contains the necessary files to run the TAMS algorithm. The `main.py` file is the file to be executed using a command of the type `python main.py`. …”

Code interpreter with LLM. by Jin Lu (428513)

“…We evaluated our proposed system on five educational datasets—AI2_ARC, OpenBookQA, E-EVAL, TQA, and ScienceQA—which represent diverse question types and domains. Compared to vanilla Large Language Models (LLMs), our approach combining Retrieval-Augmented Generation (RAG) with Code Interpreters achieved an average accuracy improvement of 10−15 percentage points. …”

S1 File - by Leyla Noroozbabaee (14100772)

Overview of MCell4 API generator. by Adam Husar (18437351)

Subjects:

In blue-red gradient, annual variation in geospatial clustering of average individual payments per zip code, with hatched overlay representing statistical significance. by Raphael E. Cuomo (9306269)

Conceptual of integrating FEM simulation in a Python scripting interface. by Chang Soon Kim (17480874)

SCADET algorithm parameter configuration (Python implementation). by Xiaolong Zhang (470454)