NanoDB: Research Activity Data Management System by Lorenci Gjurgjaj (19702207)

“…In a Python environment or as an executable. Ease of Implementation: Using the flexibility of the Python framework all the data setup and algorithm can me modified and new functions can be easily added. …”

The codes and data for "Lane Extraction from Trajectories at Road Intersections Based on Graph Transformer Network" by Chongshan Wan (19247614)

“…</li></ul><h2>Codes</h2><p dir="ltr">This repository contains the following Python codes：</p><ul><li>`data_processing.py`: Contains the implementation of data processing and feature extraction. …”

<b>Data Availability</b> by Bonyad Ahmadi (20750327)

“…</p><p dir="ltr">python scripts documenting the implementation of the Mixture Density Network (MDN) algorithm, including hyperparameter tuning and uncertainty quantification.…”

<b>Data Availability</b> by Bonyad Ahmadi (20750327)

“…</p><p dir="ltr">python scripts documenting the implementation of the Mixture Density Network (MDN) algorithm, including hyperparameter tuning and uncertainty quantification.…”

Artifact for the IJCAI 2024 paper "Solving Long-run Average Reward Robust MDPs via Stochastic Games" by Krishnendu Chatterjee (15367413)

“…<br></pre></pre><h2>Structure and How to run</h2><p dir="ltr">There are four Python files in the repository.</p><pre><pre>(i) `StrategyIteration.py` is the backend code, containing the implementation of the RPPI algorithm described in the paper.…”

Reproducible Code and Data for figures by Bonyad Ahmadi (20750327)

“…</i></p><p dir="ltr">It contains:</p><p dir="ltr">✅ <b>Python Code</b> – Scripts used for data preprocessing, and visualization.…”

Sonification of Growing Black Hole by Rose Shepherd (20328444)

“…We used the open source Python package STRAUSS to produce the sonification (Trayford and Harrison 2023). …”

Digital Twin for Chemical Sciences by Jin Qian (19339035)

“…The procedure for generating data in Figure 3 can be found in the demo notebook in Supplementary Code. The procedure for generating data of Figure 4 has been uploaded in fig4_figshare.zip file. …”

Attention and Cognitive Workload by Rui Varandas (11900993)

“…</p><p dir="ltr">The data for subject 2 do not include the 2nd part of the acquisition (python task) because the equipment stopped acquiring; subject 3 has the 1st (N-Back task and mental subtraction) and the 2nd part (python tutorial) together in the <code>First part</code> folder (file <code>D1_S3_PB_description.json</code> indicates the start and end of each task); subject 4 only has the mental subtraction task in the 1st part acquisition and in subject 8, the subtraction task data is included in the 2nd part acquisition, along with python task.…”

Sonification of Warming Stripes by Christopher Harrison (9448751)

“…The sonification was produced using the STRAUSS sonification Python package.</p><p dir="ltr">Here we release:<br>1. …”

Audio Datasets of belt conveyor rollers in mines by Juan Liu (19687435)

“…</li><li><b>Python Code: </b>This code validates the accuracy and usability of the audio feature datasets in real-time monitoring of belt conveyor roller operational states.…”

Gene Editing using Transformer Architecture by Rishabh Garg (5261744)

“…</p><p dir="ltr">Once TASAG detects a deviation from a reference sequence (e.g., the H-Bot sequence), it facilitates on-screen gene editing, enabling targeted mutations or the insertion of desired genes. Implementation requires Python and deep learning frameworks like TensorFlow or PyTorch, with optional use of Biopython for genetic sequence handling. …”

Genomic Epidemiology of SARS-CoV-2 in Peru from 2020 to 2024 by Pablo Tsukayama (22614461)

“…</p><p dir="ltr"><b>Contents:</b></p><p><b>1. Analysis Code</b></p><p>Core Python scripts used to curate metadata, process genomic data, perform lineage assignments, compute summary statistics, and prepare inputs for downstream phylogenetic and phylogeographic analyses. …”

Missing and Unaccounted-for People in Mexico (1960s–2025) by Montserrat Mora (20430644)

“…</li><li><b>Requirements File:</b> A <code>requirements.txt</code> file listing the necessary Python libraries to run the script seamlessly.…”

Moulin distributions during 2016-2021 on the southwest Greenland Ice Sheet by Kang Yang (7323734)

“…</p><p><br></p><ul><li>00_Satellite-derived moulins: Moulins directly mapped from Sentinel-2 imagery, representing actual moulin positions;</li><li>01_Snapped moulins: Moulins snapped to DEM-modeled supraglacial drainage networks, primarily used for analyses;</li><li>02_Moulin recurrences: Recurring moulins determined from the snapped moulins;</li><li>03_Internally drained catchments: Internally drained catchment (IDC) associated with each moulin;</li><li>04_Surface meltwater runoff: surface meltwater runoff calculated from MAR for the study area, elevation bins, and IDCs; </li><li>05_DEM-derived: Topographic features modeled from ArcticDEM, including elevation bins, depressions and drainage networks;</li><li>06_GWR: Variables for conducting geographically weighted regression (GWR) analysis;</li></ul><p><br></p><ul><li>Code_01_Mapping moulins on the southwestern GrIS.ipynb: A Jupyter Notebook to analyze moulin distributions, reproducing most of the analyses and figures presented in the manuscript using the provided datasets;</li><li>Code_02_pre1_calculate Strain Rate from XY ice velocity.py: A preprocessing Python script to calculate strain rate for the GWR analysis;</li><li>Code_02_pre2_calculate Driving Stress from ice thickness and surface slope.py: A preprocessing Python script to calculate driving stress for the GWR analysis;</li><li>Code_02_GWR analysis.ipynb: A Jupyter Notebook to conduct the GWR analysis using the provided datasets.…”

software code of NeoDesign by Wenqian Yu (19730101)

“…<h2>Implementation and Dependencies</h2><p dir="ltr">neoDesign was developed with python (recommend>3.9) and shell (bash) language. …”

Simulation Code and Raw Data by Melih Özkurt (22278520)

“…<p dir="ltr">Reproducible code (Python) implementing a symmetrized split-step Fourier method (SSFM), with configuration files for all scans. …”

Table & Figure.pdfBrainwaves and Higher-Order Thinking: An EEG Study of Cognitive Engagement in Mathematics Tasks by NORLIZA BINTI MOHAMED (20739875)

“…Raw and Processed Data</p> <p><br></p> <p>EEG brainwave recordings (raw and preprocessed signals)</p> <p><br></p> <p>Neurofeedback score datasets ( Neuron-Spectrum.NET )</p> <p><br></p> <p>Statistical analysis data (e.g., SPSS, MATLAB, or Python files)</p> <p><br></p> <p>Cognitive achievement test scores and student performance data</p> <p><br></p> <p><br></p> <p><br></p> <p>2. …”

Raw Data EEG.pdfBrainwaves and Higher-Order Thinking: An EEG Study of Cognitive Engagement in Mathematics Tasks by NORLIZA BINTI MOHAMED (20739875)

“…Raw and Processed Data</p> <p><br></p> <p>EEG brainwave recordings (raw and preprocessed signals)</p> <p><br></p> <p>Neurofeedback score datasets ( Neuron-Spectrum.NET )</p> <p><br></p> <p>Statistical analysis data (e.g., SPSS, MATLAB, or Python files)</p> <p><br></p> <p>Cognitive achievement test scores and student performance data</p> <p><br></p> <p><br></p> <p><br></p> <p>2. …”

Dataset for: Phylotranscriptomics reveals the phylogeny of Asparagales and the evolution of allium flavor biosynthesis, Nature Communications，DOI：10.1038/s41467-024-53943-6 by Xiao-Xiao Wang (2447920)

“…Convert the aligned homolog groups from fasta format to phylip format using <i>phylpwrtr.py </i>(this script was deposited on this website).</p><p dir="ltr"><i>python /path_DISCO/phylpwrtr.py input.fa output.fa max_number_allowed_in_sequence_head</i></p><p dir="ltr"><i>python ca_disco.py -i a_text_file_includes_all_homolog_trees -o output.phy -a a_text_file_includes_the_path_of_aligned_homologs -t a_list_file_includes_names_of_the_501_samples -m min_number_of_taxon_allowed_for_each_ortholog</i></p><p dir="ltr">a_text_file_includes_all_homolog_trees: each line of this file include one homolog tree.…”