Elements: Streaming Molecular Dynamics Simulation Trajectories for Direct Analysis – Applications to Sub-Picosecond Dynamics in Microsecond Simulations حسب Matthias Heyden (17087794)

"…This eliminates the need for intermediate storage and allows immediate access to high-frequency fluctuations and vibrational signatures that would otherwise be inaccessible. We have implemented this streaming interface in the MD engines NAMD, LAMMPS, and GROMACS</p><p dir="ltr">On the client side, we developed the IMDClient Python package which receives the streamed data, stores into a custom buffer, and provides it to external tools as NumPy arrays, facilitating integration with scientific computing workflows. …"

Intersection and distinction of essential compounds and targets from 5 primary sources. حسب Gyaltsen Dakpa (21439920)

"…<b>(B)</b> UniProt and SwissTarget Prediction-predicted target proteins and 658 actives are intersected using the Jvenn Python to plot the intersection of targets in which Purple represents <i>R. officinalis</i>, Green indicates S. officinalis, Orange represents <b><i>T.…"

Fast, FAIR, and Scalable: Managing Big Data in HPC with Zarr حسب Alfonso Ladino (21447002)

"…(NEXRAD), using open-source tools from the Python ecosystem such as Xarray, Xradar, and Dask to enable efficient parallel processing and scalable analysis. …"

HCC Evaluation Dataset and Results حسب Jens-Rene Giesen (18461928)

"…</p><h3>Report Script</h3><p dir="ltr">On the top-level directory you find a <code>report.py</code> file, which is an executable Python script. The only requirement for running this script is a Python 3.6+ interpreter as well as an installation of the <code>numpy</code> package. …"

<b>Dataset for manuscript: </b><b>Phylogenetic and genomic insights into the evolution of terpenoid biosynthesis genes in diverse plant lineages</b> حسب Puguang Zhao (19023065)

"…</p><p dir="ltr"> Generates a scatter plot with a linear regression line and saves it as 'Correlation_Plot.pdf' (Figure 5D).…"

Probabilistic-QSR-GeoQA حسب Mohammad Kazemi (19442467)

"…Also we have written Python API for Probcog (ProbCog-API.py) and SparQ reasoners (SparQ-API.py).…"

Genosophus: A Dynamical-Systems Diagnostic Engine for Neural Representation Analysis حسب Alan Glanz (22109698)

"…</p><p dir="ltr">Genosophus addresses this gap by offering:</p><ul><li>A <b>quantitative diagnostic toolkit</b> for internal model health</li><li>A <b>framework for detecting emergent structure</b></li><li>A <b>method to measure phase transitions, collapse, or stabilization</b></li><li>A <b>model-agnostic system for embedding-space dynamics</b></li></ul><p dir="ltr">This tool is intended for use in interpretability research, safety evaluations, representation studies, and monitoring model behavior during training or fine-tuning.</p><h2><b>Included Files</b></h2><h3><b>1. </b><code><strong>GenosophusV2.py</strong></code></h3><p dir="ltr">Executable Python implementation of the Genosophus Engine.…"

<b>Use case codes of the DDS3 and DDS4 datasets for bacillus segmentation and tuberculosis diagnosis, respectively</b> حسب Marly G F Costa (19812192)

"…The encoder was implemented with depth-wise separable convolution layers13.…"

Data and code for: Automatic fish scale analysis حسب Christian Vogelmann (21646472)

"…</i></li></ul></li><li><b>README.txt</b> – detailed file explanations and usage instructions</li></ul><p dir="ltr">The full statistical analysis and visualization pipeline is implemented in R and hosted on GitHub:<br>https://github.com/Birdy332/Automatic-fish-scale-analysis-r-scripts</p><p dir="ltr"><br></p><p dir="ltr">All figures shown in the manuscript can be reproduced using these scripts and the datasets provided here.…"

The artifacts and data for the paper "DD4AV: Detecting Atomicity Violations in Interrupt-Driven Programs with Guided Concolic Execution and Filtering" (OOPSLA 2025) حسب zixuan yuan (17602152)

"…</p><pre><pre>sudo apt-get install -y wget git build-essential python3 python python-pip python3-pip tmux cmake libtool libtool-bin automake autoconf autotools-dev m4 autopoint libboost-dev help2man gnulib bison flex texinfo zlib1g-dev libexpat1-dev libfreetype6 libfreetype6-dev libbz2-dev liblzo2-dev libtinfo-dev libssl-dev pkg-config libswscale-dev libarchive-dev liblzma-dev liblz4-dev doxygen libncurses5 vim intltool gcc-multilib sudo --fix-missing<br></pre></pre><pre><pre>pip install numpy && pip3 install numpy && pip3 install sysv_ipc<br></pre></pre><h4><b>Download the Code</b></h4><p dir="ltr">Download <b>DD4AV</b> from the Figshare website to your local machine and navigate to the project directory:</p><pre><pre>cd DD4AV<br></pre></pre><h4><b>Configure Environment and Install the Tool</b></h4><p dir="ltr">For convenience, we provide shell scripts to automate the installation process. …"

<b>Code and derived data for</b><b>Training Sample Location Matters: Accuracy Impacts in LULC Classification</b> حسب Pajtim Zariqi (22155799)

"…<p dir="ltr">This repository contains the analysis code and derived outputs for the study <i>“Training Sample Location Matters: Accuracy Impacts in LULC Classification”</i>. The workflow was implemented in Google Earth Engine (JavaScript API) and replicated in Python notebooks (Jupyter/Kaggle) for reproducibility.…"

Testing Code for JcvPCA and JsvCRP. حسب Océane Dubois (21989812)

"…<p>This file contains the code that implements both metrics in python and apply them on a simulated dataset.…"

The global dryland lake storage (GDLS) dataset حسب Gang Zhao (18368925)

"…</b><b>ipynb</b><br>A Python example to show the location of a given lake and to plot monthly time series of area/elevation/storage for this lake.…"

Interleg coordination in 103 adult <i>Hypsibius exemplaris</i> individuals. حسب Emma M. Anderson (19697573)

"…D. Probability density plot of ϕ_C vs. ϕ_I for second and third pair legs, n = 4414 strides. …"

Mapping Policy Coherence in National UK Food Systems (2008– 2024): Analysing the Integration of Climate Change Mitigation and Adaptation Strategies, LEAP 2025 conference, Oxford حسب Ronja Teschner (20974180)

"…Van Rossum, G.; Drake, F. L. Python 3 Reference Manual, 2009.</p></td></tr></table><p></p>…"

Tracking when the number of individuals in the video frame changes. حسب Hirotsugu Azechi (20700528)

"…The diagram illustrates changes across different experimental conditions, with plots indicating the frequency for each keypoint and bars representing each ID pair. …"

Sonification of Warming Stripes حسب Christopher Harrison (9448751)

"…A zip file containing all of the scripts (in the form of Python Jupyter notebooks) that were used to produce the sonification, and the plots for the explanation article (Sonification Warming Stripes.pdf). …"

Ambient Air Pollutant Dynamics (2010–2025) and the Exceptional Winter 2016–17 Pollution Episode: Implications for a Uranium/Arsenic Exposure Event حسب Thomas Clemens Carmine (19756929)

"…The full implementation is detailed in the accompanying Python script (Imputation_Air_Pollutants_NABEL.py). …"

Hippocampal and cortical activity reflect early hyperexcitability in an Alzheimer's mouse model حسب Marina Diachenko (19739092)

"…</p><p dir="ltr">All data are available upon request. The standalone Python implementation of the fE/I algorithm is available under a CC-BY-NC-SA license at <a href="https://github.com/arthur-ervin/crosci" target="_blank">https://github.com/arthur-ervin/crosci</a>. …"

<b>Rethinking neighbourhood boundaries for urban planning: A data-driven framework for perception-based delineation</b> حسب Shubham Pawar (22471285)

"…Each color represents a distinct cluster.</p><p dir="ltr"><b>Code to generate:</b></p><pre><pre>import geopandas as gpd<br>import matplotlib.pyplot as plt<br><br>gdf = gpd.read_file('.…"