Overview of the SBML models used in this study. The collection of models was retrieved from Biomodels [43] and a previously reported collection of SBML benchmark models [11]. The n... by Paul van Lent (16876977)

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Finites differences python code to solve CH equation with a source term and Comsol routine to solve Brusselator equation in radial domains. by Giulio Facchini (9031490)

“…<p dir="ltr"><b><i>* Cahn-Hilliard simulations *</i></b><br>Finite difference code implementing the modified Cahn Hilliard equation with a forward Euler scheme and the possibility to parallelize the solver using the numba python library.…”

Parameter estimates and estimated standard errors from the EE algorithm. by Alex Stivala (8356257)

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Type II error rate from estimation of simulated outcomes using the EE algorithm. by Alex Stivala (8356257)

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Type I error rate from estimation of simulated outcomes using the EE algorithm. by Alex Stivala (8356257)

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SCADET algorithm parameter configuration (Python implementation). by Xiaolong Zhang (470454)

code implementing the finite element method and finite difference method from Hybrid PDE-ODE Models for Efficient Simulation of Infection Spread in Epidemiology by Kristina Maier (20520371)

“…This dataset contains code implementing the finite element method based on Kaskade 7 (C++) and code implementing the finite difference method (Python) for the development of hybrid PDE-ODE models aimed at efficiently simulating infection spread in epidemiology. …”

Supporting data for "Interpreting complex ecological patterns and processes across differentscales using Artificial Intelligence" by Yifei Gu (9507104)

“…The detailed implementation, source code and demo dataset are included in dedicated folders for each chapter.…”

Cost functions implemented in Neuroptimus. by Máté Mohácsi (20469514)

“…However, using most of these software tools and choosing the most appropriate algorithm for a given optimization task require substantial technical expertise, which prevents the majority of researchers from using these methods effectively. To address these issues, we developed a generic platform (called Neuroptimus) that allows users to set up neural parameter optimization tasks via a graphical interface, and to solve these tasks using a wide selection of state-of-the-art parameter search methods implemented by five different Python packages. …”

2D Orthogonal Planes Split: <b>Python</b> and <b>MATLAB</b> code | <b>Source Images</b> for Figures by Nektarios Valous (20715650)

“…The output files generated by the code include results from both Python and MATLAB implementations; these output images are provided as validation, demonstrating that both implementations produce matching results.…”

CSMILES: A Compact, Human-Readable SMILES Extension for Conformations by James W. Furness (22319738)

“…As such, canonical CSMILES strings are invariant to atom reordering, rigid translation, and rigid rotation. A two-way conversion from three-dimensional (3D) structure to CSMILES has been implemented, and the article is accompanied by a Python code which effectuates such conversions. …”

CSMILES: A Compact, Human-Readable SMILES Extension for Conformations by James W. Furness (22319738)

“…As such, canonical CSMILES strings are invariant to atom reordering, rigid translation, and rigid rotation. A two-way conversion from three-dimensional (3D) structure to CSMILES has been implemented, and the article is accompanied by a Python code which effectuates such conversions. …”

Example ALAAMEE output. by Alex Stivala (8356257)

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Example ALAAMEE goodness-of-fit output. by Alex Stivala (8356257)

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SecurityGuidelinesRetrievalForPythonCodeGen by Catherine Tony (18368913)

“…Using Task-Specific Guidelines for Secure Python Code Generation: Replication Package"</p><p dir="ltr">This replication package contains SecGuide along with the results of each step followed in its creation, the scripts that implement all the prompting approaches and the code generated by the LLMs using these approaches. …”

BaNDyT: Bayesian Network Modeling of Molecular Dynamics Trajectories by Elizaveta Mukhaleva (20602550)

“…We believe that BaNDyT is the first software package to include specialized and advanced features for analyzing MD simulation trajectories using a probabilistic graphical network model. We describe here the software’s uses, the methods associated with it, and a comprehensive Python interface to the underlying generalist BNM code. …”

BaNDyT: Bayesian Network Modeling of Molecular Dynamics Trajectories by Elizaveta Mukhaleva (20602550)

“…We believe that BaNDyT is the first software package to include specialized and advanced features for analyzing MD simulation trajectories using a probabilistic graphical network model. We describe here the software’s uses, the methods associated with it, and a comprehensive Python interface to the underlying generalist BNM code. …”

BaNDyT: Bayesian Network Modeling of Molecular Dynamics Trajectories by Elizaveta Mukhaleva (20602550)

“…We believe that BaNDyT is the first software package to include specialized and advanced features for analyzing MD simulation trajectories using a probabilistic graphical network model. We describe here the software’s uses, the methods associated with it, and a comprehensive Python interface to the underlying generalist BNM code. …”

Multifunctional Lead-Free Halide Perovskite-Based Nanogenerator for Enhanced Energy Harvesting and Information-Encrypted Transmission by Monika Salesh (15306281)

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Multifunctional Lead-Free Halide Perovskite-Based Nanogenerator for Enhanced Energy Harvesting and Information-Encrypted Transmission by Monika Salesh (15306281)

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