Cost functions implemented in Neuroptimus. by Máté Mohácsi (20469514)

“…However, using most of these software tools and choosing the most appropriate algorithm for a given optimization task require substantial technical expertise, which prevents the majority of researchers from using these methods effectively. To address these issues, we developed a generic platform (called Neuroptimus) that allows users to set up neural parameter optimization tasks via a graphical interface, and to solve these tasks using a wide selection of state-of-the-art parameter search methods implemented by five different Python packages. …”

Example change statistic implementations. by Alex Stivala (8356257)

“…ALAAMEE implements both the stochastic approximation and equilibrium expectation (EE) algorithms for ALAAM parameter estimation, including estimation from snowball sampled network data. …”

PYTHON by Kan Jia (21666161)

Reproducible implementation for article: Reproducibility study of the modular and reusable model of epithelial transport in the proximal convoluted tubule by Leyla Noroozbabaee (14301173)

Pseudo live-stream of EEG data is generated, and a simple pick-and-place flowchart is designed for channel selection and filtering. by Gursimran Singh (575288)

Results obtained from the Bistable Gut Inflammation Detector model. by Fabricio Cravo (21387854)

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Python sript. by Kan Jia (6438599)

PTPC-UHT bounce by David Parry (22169299)

“…<br>It contains the full Python implementation of the PTPC bounce model (<code>PTPC_UHT_bounce.py</code>) and representative outputs used to generate the figures in the paper. …”

Overview of the implemented simulation tool and training framework in Diffrax. by Paul van Lent (16876977)

(a) System dynamics: schematic representation of all the reactions in the Tree model, which are aging, reproduction, color cycle, and competition. by Fabricio Cravo (21387854)

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Secure Python Code Manager: A Tool for Protected Python Code Distribution and Management by Pavel Izosimov (20096259)

“…This tool allows developers worldwide to <b>share Python code securely</b>, ensuring their intellectual property is better protected from unauthorized access and misuse.…”

Parameter estimates and estimated standard errors from the EE algorithm. by Alex Stivala (8356257)

Python file of the computational framework. by Benoit Haut (9753029)

Correlation (a) and Mean-Absolute-Error (b) between frequencies at a reference cutoff, δ₀, and different frequencies, , at different cutoff-values, δ_scan ∊ [3... by Guillermo Pérez-Hernández (21156182)

Left schematic of the XOR gate implementation [11]. by Fabricio Cravo (21387854)

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Simulated dynamics of the Mutual Annihilation protocol [26]. by Fabricio Cravo (21387854)

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Heatmap showing the simulated output of the XOR circuit by Tamsir <i>et al</i>. [11]. by Fabricio Cravo (21387854)

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Simulation results for the phage communication circuit from Pathania <i>et al</i>. [5]. by Fabricio Cravo (21387854)

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Matching products with reactants for the example meta-reaction where S1 and S2 are distinct meta-species. by Fabricio Cravo (21387854)

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Simulation results of the quorum sensing circuit by Omar Din <i>et al</i>. [28]. by Fabricio Cravo (21387854)

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