Python implementation of a wildfire propagation example using m:n-CAk over Z and R. by Pau Fonseca i Casas (9507338)

Secure Python Code Manager: A Tool for Protected Python Code Distribution and Management by Pavel Izosimov (20096259)

“…A license key is generated, allowing authorized users to access the code.bash<pre><pre>python secure_python_code_manager.py --upload -f your_script.py<br></pre></pre></li><li><b>Updating Previously Uploaded Code</b>: With the <code>--update</code> function, update your code in the cloud without needing to redistribute new files to clients, ensuring seamless code maintenance and updates.bash<pre><pre>python secure_python_code_manager.py --update -f your_script.py -l your_license_key<br></pre></pre></li><li><b>Retrieving License Information</b>: The <code>--license-info</code> function lets you retrieve detailed information about your licenses, including status, usage data, and limits.bash<pre><pre>python secure_python_code_manager.py --license-info -l your_license_key<br></pre></pre></li><li><b>Service Usage Monitoring</b>: Use the <code>--service-usage</code> function to monitor your service usage, including uploaded scripts and associated licenses, helping you keep track of your code deployment.bash<pre><pre>python secure_python_code_manager.py --service-usage<br></pre></pre></li></ol><h2>Use Cases</h2><ul><li><b>Protect Python Code</b>: If you're looking to <b>protect Python code</b> from unauthorized use, this tool provides robust protection mechanisms.…”

Multi-Version PYZ Builder Script: A Universal Python Module Creation Tool by Pavel Izosimov (20096259)

“…</li><li><b>Python App Bundle Shield</b>: Enables the creation of standalone protected applications and executable files from Python scripts. …”

Genomic Surveillance of Pemivibart (VYD2311) Escape-Associated Mutations in SARS-CoV-2: December 2025 BioSamples (n=2) by Tahir Bhatti (20961974)

“…The samples (SRR36268464, SRR36225071) were retrieved from the NCBI Sequence Read Archive (SRA) and represent publicly available, real-world viral specimens collected during the final month of 2025, <b>the most recent temporal window available at the time of analysis.…”

MCCN Case Study 3 - Select optimal survey locality by Donald Hobern (21435904)

Dataset for: Phylotranscriptomics reveals the phylogeny of Asparagales and the evolution of allium flavor biosynthesis, Nature Communications，DOI：10.1038/s41467-024-53943-6 by Xiao-Xiao Wang (2447920)

“…</p><p dir="ltr">First, root 857 ortholog trees using script <a href="https://bitbucket.org/dfmoralesb/target_enrichment_orthology/src/master/scripts/root_trees_multiple_outgroups_MO.py" target="_self">root_trees_multiple_outgroups_MO.py</a> accessed from https://bitbucket.org/dfmoralesb/target_enrichment_orthology/src/master/scripts/</p><p dir="ltr"><i>python2 root_trees_multiple_outgroups_MO.py DIR_includes_the_857_ortholog_trees tree_file_ending output_DIR a_list_includes_names_of_outgroups</i></p><p dir="ltr">Next, execute PhyParts.…”

Elements: Streaming Molecular Dynamics Simulation Trajectories for Direct Analysis – Applications to Sub-Picosecond Dynamics in Microsecond Simulations by Matthias Heyden (17087794)

“…<p dir="ltr">We present a software development effort aimed at enabling real-time analysis of data from molecular dynamics (MD) simulations of biomolecules such as proteins. …”

Global Aridity Index and Potential Evapotranspiration (ET0) Database: Version 3.1 by Robert Zomer (12796235)

“…This multiplier has been used to increase the precision of the variable values without using decimals. The Readme File is provided with a detailed description of the dataset files. …”

The artifacts and data for the paper "DD4AV: Detecting Atomicity Violations in Interrupt-Driven Programs with Guided Concolic Execution and Filtering" (OOPSLA 2025) by zixuan yuan (17602152)

“…</li><li><code><strong>wllvm</strong></code>: The third-party library project WLLVM provides tools for building whole-program LLVM bitcode files from unmodified C or C++ source packages.</li></ul></li><li><code><strong>test</strong></code>: A few simple examples that are easy to understand and can be used to verify the installation.…”

CNG-ARCO-RADAR.pdf by Alfonso Ladino (21447002)

“…This approach uses a suite of Python libraries, including Xarray (Xarray-Datatree), Xradar, and Zarr, to implement a hierarchical tree-like data model. …”

Fast, FAIR, and Scalable: Managing Big Data in HPC with Zarr by Alfonso Ladino (21447002)

“…Our implementation shows processing time reductions of up to 210× compared to traditional workflows, even on standard hardware. …”

Data and some code used in the paper:<b>Expansion quantization network: A micro-emotion detection and annotation framework</b> by Zhou (20184816)

“…For the specific implementation method, please refer to our paper</p><p><br></p><p><br></p><p dir="ltr">Note:</p><p dir="ltr">1. gotrainadd.csv: Goemotions dataset with additional annotation (micro-emotion labels with energy level intensity values(0-10)).…”

Ambient Air Pollutant Dynamics (2010–2025) and the Exceptional Winter 2016–17 Pollution Episode: Implications for a Uranium/Arsenic Exposure Event by Thomas Clemens Carmine (19756929)

“…The full implementation is detailed in the accompanying Python script (Imputation_Air_Pollutants_NABEL.py). …”

Genosophus: A Dynamical-Systems Diagnostic Engine for Neural Representation Analysis by Alan Glanz (22109698)

“…</p><h2><b>Included Files</b></h2><h3><b>1. </b><code><strong>GenosophusV2.py</strong></code></h3><p dir="ltr">Executable Python implementation of the Genosophus Engine.…”

Code by Baoqiang Chen (21099509)

“…</p><p><br></p><p dir="ltr">For the 5′ UTR library, we developed a Python script to extract sequences and Unique Molecular Identifiers (UMIs) from the FASTQ files. …”

Core data by Baoqiang Chen (21099509)

“…</p><p><br></p><p dir="ltr">For the 5′ UTR library, we developed a Python script to extract sequences and Unique Molecular Identifiers (UMIs) from the FASTQ files. …”

Supplementary Data: Biodiversity and Energy System Planning - Queensland 2025 by Andrew Rogers (17623239)

“…</p><h2>Software and Spatial Resolution</h2><p dir="ltr">The VRE siting model is implemented using Python and relies heavily on ArcGIS for comprehensive spatial data handling and analysis.…”