Example change statistic implementations. by Alex Stivala (8356257)

“…ALAAMEE implements both the stochastic approximation and equilibrium expectation (EE) algorithms for ALAAM parameter estimation, including estimation from snowball sampled network data. …”

Global Aridity Index and Potential Evapotranspiration Climate Database v3.1 - Algorithm Code (Python) by Robert Zomer (12796235)

World map demonstrating the countries that have implemented some level of liberal drug policies versus countries that had publications included in this scoping review. by Mana Mohebbian (22439269)

Supporting data for "Interpreting complex ecological patterns and processes across differentscales using Artificial Intelligence" by Yifei Gu (9507104)

“…<p dir="ltr">This thesis bridges the gap between field observations and the empirical understanding of ecological systems by applying AI models at different spatial scales and hierarchical levels to study ecological complexity. The detailed implementation, source code and demo dataset are included in dedicated folders for each chapter.…”

Extending the pyAFQ software. by John Kruper (18809386)

Overview of deep learning terminology. by Aaron E. Maxwell (8840882)

“…Training loops are implemented with the luz package. The geodl package provides utility functions for creating raster masks or labels from vector-based geospatial data and image chips and associated masks from larger files and extents. …”

Gene Editing using Transformer Architecture by Rishabh Garg (5261744)

“…Implementation requires Python and deep learning frameworks like TensorFlow or PyTorch, with optional use of Biopython for genetic sequence handling. …”

Dataset for: Phylotranscriptomics reveals the phylogeny of Asparagales and the evolution of allium flavor biosynthesis, Nature Communications，DOI：10.1038/s41467-024-53943-6 by Xiao-Xiao Wang (2447920)

“…</p><p dir="ltr"><i>python2 taxon_name_subst.py taxon_list name_of_phylogenetic_tree</i></p><p><br></p><p dir="ltr"><b>Step 8: Assess phylogenetic conflicts</b></p><p dir="ltr">8.1. …”

Table 3_Novel deep learning-based prediction of HER2 expression in breast cancer using multimodal MRI, nomogram, and decision curve analysis.docx by Shi Qiu (425335)

“…Nomogram construction, ROC analysis, and DCA evaluation were performed to assess model performance. Statistical analyses were conducted using Python and R, with significance set at p < 0.05.…”

Table 2_Novel deep learning-based prediction of HER2 expression in breast cancer using multimodal MRI, nomogram, and decision curve analysis.docx by Shi Qiu (425335)

“…Nomogram construction, ROC analysis, and DCA evaluation were performed to assess model performance. Statistical analyses were conducted using Python and R, with significance set at p < 0.05.…”

Table 1_Novel deep learning-based prediction of HER2 expression in breast cancer using multimodal MRI, nomogram, and decision curve analysis.docx by Shi Qiu (425335)

“…Nomogram construction, ROC analysis, and DCA evaluation were performed to assess model performance. Statistical analyses were conducted using Python and R, with significance set at p < 0.05.…”

Data Sheet 1_Novel deep learning-based prediction of HER2 expression in breast cancer using multimodal MRI, nomogram, and decision curve analysis.docx by Shi Qiu (425335)

“…Nomogram construction, ROC analysis, and DCA evaluation were performed to assess model performance. Statistical analyses were conducted using Python and R, with significance set at p < 0.05.…”

Genomic Surveillance of Pemivibart (VYD2311) Escape-Associated Mutations in SARS-CoV-2: December 2025 BioSamples (n=2) by Tahir Bhatti (20961974)

“…<p dir="ltr">This dataset presents computational analyses of two SARS-CoV-2 BioSamples sequenced in December 2025, processed to assess the genomic presence of mutations associated with pemivibart (VYD2311) monoclonal antibody escape. …”

World Heritage documents reveal persistent gaps between climate awareness and local action by Yang Chen (20756166)

“…The documents are sourced from publicly available official reports. The analysis section includes a GLM model implemented in R, along with evaluation tools such as correlation heatmaps, ICC agreement analysis, and MCC-based binary classification assessment. …”

DataSheet1_Prostruc: an open-source tool for 3D structure prediction using homology modeling.PDF by Shivani V. Pawar (20355171)

“…Prostruc implements a two-stage vSquarealidation process: first, it uses TM-align for structural comparison, assessing Root Mean Deviations (RMSD) and TM scores against reference models. …”

DataSheet1_Prostruc: an open-source tool for 3D structure prediction using homology modeling.PDF by Shivani V. Pawar (20355171)

“…Prostruc implements a two-stage vSquarealidation process: first, it uses TM-align for structural comparison, assessing Root Mean Deviations (RMSD) and TM scores against reference models. …”

Data sets and coding scripts for research on sensory processing in ADHD and ASD by Vesko Varbanov (9687029)

“…Sensory processing was assessed via a method-of-constant-stimuli orientation discrimination task implemented in PsychoPy, using interleaved adaptive staircases following a one-up/three-down rule.…”

Ambient Air Pollutant Dynamics (2010–2025) and the Exceptional Winter 2016–17 Pollution Episode: Implications for a Uranium/Arsenic Exposure Event by Thomas Clemens Carmine (19756929)

“…<br></li></ul></li><li><b>Imputation_Air_Pollutants_NABEL.py</b> (Python Script)</li><li><ul><li>The Python code used to perform all data cleaning, imputation, plausibility checks, and calculations, generating the Imputed_AP_Data_Zurich_2010-25 sheet and associated stats/legend info from the raw data. …”

CNG-ARCO-RADAR.pdf by Alfonso Ladino (21447002)

“…This approach uses a suite of Python libraries, including Xarray (Xarray-Datatree), Xradar, and Zarr, to implement a hierarchical tree-like data model. …”

Code by Baoqiang Chen (21099509)

“…</p><p><br></p><p dir="ltr">For the 5′ UTR library, we developed a Python script to extract sequences and Unique Molecular Identifiers (UMIs) from the FASTQ files. …”