Overview of the implemented simulation tool and training framework in Diffrax. by Paul van Lent (16876977)

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Overview of the SBML models used in this study. The collection of models was retrieved from Biomodels [43] and a previously reported collection of SBML benchmark models [11]. The n... by Paul van Lent (16876977)

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Comparison of performance between our next reaction implementation and the Python library from Ref. [3]. by Samuel Cure (22250922)

“…<p>We simulate SIR epidemic processes on Watts-Strogatz networks with parameters <i>k</i>₀ = 5, <i>p</i> = 0.1 <b>(a)</b> and Barabási-Albert networks with parameter <i>m</i> = 5 <b>(b)</b> using the Python wrapper of our C++ implementation and compare its performance with the Python library from Ref. …”

Python implementation of a wildfire propagation example using m:n-CAk over Z and R. by Pau Fonseca i Casas (9507338)

Example change statistic implementations. by Alex Stivala (8356257)

“…ALAAMEE implements both the stochastic approximation and equilibrium expectation (EE) algorithms for ALAAM parameter estimation, including estimation from snowball sampled network data. …”

PYTHON by Kan Jia (21666161)

Reproducible implementation for article: Reproducibility study of the modular and reusable model of epithelial transport in the proximal convoluted tubule by Leyla Noroozbabaee (14301173)

Python sript. by Kan Jia (6438599)

BaNDyT: Bayesian Network Modeling of Molecular Dynamics Trajectories by Elizaveta Mukhaleva (20602550)

“…We describe here the software’s uses, the methods associated with it, and a comprehensive Python interface to the underlying generalist BNM code. …”

BaNDyT: Bayesian Network Modeling of Molecular Dynamics Trajectories by Elizaveta Mukhaleva (20602550)

“…We describe here the software’s uses, the methods associated with it, and a comprehensive Python interface to the underlying generalist BNM code. …”

BaNDyT: Bayesian Network Modeling of Molecular Dynamics Trajectories by Elizaveta Mukhaleva (20602550)

“…We describe here the software’s uses, the methods associated with it, and a comprehensive Python interface to the underlying generalist BNM code. …”

Secure Python Code Manager: A Tool for Protected Python Code Distribution and Management by Pavel Izosimov (20096259)

“…This tool allows developers worldwide to <b>share Python code securely</b>, ensuring their intellectual property is better protected from unauthorized access and misuse.…”

Parameter estimates and estimated standard errors from the EE algorithm. by Alex Stivala (8356257)

Python file of the computational framework. by Benoit Haut (9753029)

Type II error rate from estimation of simulated outcomes using the EE algorithm. by Alex Stivala (8356257)

Type I error rate from estimation of simulated outcomes using the EE algorithm. by Alex Stivala (8356257)

Fitting a feast/famine cycle to a glycolysis model. by Paul van Lent (16876977)

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Jaxkineticmodel allows for hybridizing kinetic models with neural networks. by Paul van Lent (16876977)

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Analysis of convergence properties for a collection of SBML models. by Paul van Lent (16876977)

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Apple point cloud generated by python script. by Xiaoyang Liu (1815211)