Reproducible implementation for article: Reproducibility study of the modular and reusable model of epithelial transport in the proximal convoluted tubule by Leyla Noroozbabaee (14301173)

Example change statistic implementations. by Alex Stivala (8356257)

“…ALAAMEE implements both the stochastic approximation and equilibrium expectation (EE) algorithms for ALAAM parameter estimation, including estimation from snowball sampled network data. …”

PYTHON by Kan Jia (21666161)

Python sript. by Kan Jia (6438599)

Cost functions implemented in Neuroptimus. by Máté Mohácsi (20469514)

“…However, using most of these software tools and choosing the most appropriate algorithm for a given optimization task require substantial technical expertise, which prevents the majority of researchers from using these methods effectively. To address these issues, we developed a generic platform (called Neuroptimus) that allows users to set up neural parameter optimization tasks via a graphical interface, and to solve these tasks using a wide selection of state-of-the-art parameter search methods implemented by five different Python packages. …”

Overview of the SBML models used in this study. The collection of models was retrieved from Biomodels [43] and a previously reported collection of SBML benchmark models [11]. The n... by Paul van Lent (16876977)

SCADET algorithm parameter configuration (Python implementation). by Xiaolong Zhang (470454)

Comparison of performance between our next reaction implementation and the Python library from Ref. [3]. by Samuel Cure (22250922)

“…<p>We simulate SIR epidemic processes on Watts-Strogatz networks with parameters <i>k</i>₀ = 5, <i>p</i> = 0.1 <b>(a)</b> and Barabási-Albert networks with parameter <i>m</i> = 5 <b>(b)</b> using the Python wrapper of our C++ implementation and compare its performance with the Python library from Ref. …”

Multifunctional Lead-Free Halide Perovskite-Based Nanogenerator for Enhanced Energy Harvesting and Information-Encrypted Transmission by Monika Salesh (15306281)

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Multifunctional Lead-Free Halide Perovskite-Based Nanogenerator for Enhanced Energy Harvesting and Information-Encrypted Transmission by Monika Salesh (15306281)

Subjects:

Multifunctional Lead-Free Halide Perovskite-Based Nanogenerator for Enhanced Energy Harvesting and Information-Encrypted Transmission by Monika Salesh (15306281)

Subjects:

Multifunctional Lead-Free Halide Perovskite-Based Nanogenerator for Enhanced Energy Harvesting and Information-Encrypted Transmission by Monika Salesh (15306281)

Subjects:

A comparison between the static Python-based visualizations of the p65 activity in activated fibroblasts and the dynamic, HTML-based visualizations that use these same reduction me... by Hector Torres (11708207)

“…<p><b>(a)</b> UMAP, t-SNE, PCA, and Diffmap were first generated using the Python libraries Scikit-learn, UMAP, and PyDiffmap within Jupyter to generate static graphs as a starting point. …”

Python implementation of a wildfire propagation example using m:n-CAk over Z and R. by Pau Fonseca i Casas (9507338)

Information from interactions. by Sylvia Iasulaitis (8301189)

“…<div><p>The main objective of this study is to describe the process of collecting data extracted from Twitter (X) during the Brazilian presidential elections in 2022, encompassing the post-election period and the event of the attack on the buildings of the executive, legislative, and judiciary branches in January 2023. …”

Corpora from the articles in order of size. by Sylvia Iasulaitis (8301189)

“…<div><p>The main objective of this study is to describe the process of collecting data extracted from Twitter (X) during the Brazilian presidential elections in 2022, encompassing the post-election period and the event of the attack on the buildings of the executive, legislative, and judiciary branches in January 2023. …”

Simple implementation examples of agent AI on free energy calculation and phase-field simulation by Toshiyuki Koyama (22828581)

“…</p> <p>Using Gibbs energy calculations and diffusion simulations as examples, we demonstrated the implementation method and usefulness of simple agent AI, where sample python codes are distributed as supplemental materials.…”

Complex Eigenvalues, Orthogonality, and QR Factorization: Analytical Proofs and Numerical Verification by Umar Tabbsum (22058780)

“…</p><p dir="ltr">This study provides a computationally verified, reproducible framework for exploring key concepts in numerical linear algebra, and it is suitable as both a teaching resource and a reference for researchers implementing high-precision matrix computations.…”

World map demonstrating the countries that have implemented some level of liberal drug policies versus countries that had publications included in this scoping review. by Mana Mohebbian (22439269)

EthoPy: Reproducible Behavioral Neuroscience Made Simple by Alexandros Evangelou (22235917)

“…To overcome these challenges, we developed EthoPy, an open-source, Python-based behavioral control framework that integrates stimulus presentation, hardware management, and data logging. …”