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python study » method study (Expand Search)
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Comparison of performance between our next reaction implementation and the Python library from Ref. [3].
Published 2025“…<p>We simulate SIR epidemic processes on Watts-Strogatz networks with parameters <i>k</i><sub>0</sub> = 5, <i>p</i> = 0.1 <b>(a)</b> and Barabási-Albert networks with parameter <i>m</i> = 5 <b>(b)</b> using the Python wrapper of our C++ implementation and compare its performance with the Python library from Ref. …”
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A comparison between the static Python-based visualizations of the p65 activity in activated fibroblasts and the dynamic, HTML-based visualizations that use these same reduction me...
Published 2025“…<p><b>(a)</b> UMAP, t-SNE, PCA, and Diffmap were first generated using the Python libraries Scikit-learn, UMAP, and PyDiffmap within Jupyter to generate static graphs as a starting point. …”
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Example change statistic implementations.
Published 2024“…ALAAMEE implements both the stochastic approximation and equilibrium expectation (EE) algorithms for ALAAM parameter estimation, including estimation from snowball sampled network data. …”
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Cost functions implemented in Neuroptimus.
Published 2024“…However, using most of these software tools and choosing the most appropriate algorithm for a given optimization task require substantial technical expertise, which prevents the majority of researchers from using these methods effectively. To address these issues, we developed a generic platform (called Neuroptimus) that allows users to set up neural parameter optimization tasks via a graphical interface, and to solve these tasks using a wide selection of state-of-the-art parameter search methods implemented by five different Python packages. …”
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Secure Python Code Manager: A Tool for Protected Python Code Distribution and Management
Published 2024“…This tool allows developers worldwide to <b>share Python code securely</b>, ensuring their intellectual property is better protected from unauthorized access and misuse.…”
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