Predictions at the A) <i>invected</i> and B) <i>vestigial</i> loci. by Bjørn André Bredesen-Aa (13767126)

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Prediction overlap with experimental data. by Bjørn André Bredesen-Aa (13767126)

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python3 software to reproduce Figs 6, 7 and 8. by Stéphane Plaszczynski (14992817)

Modelling COVID-19 evolution and control in Portugal: Code and data from 2 of March to 19 August 2020. by Ricardo Jorge Pais (3627494)

“…In this online repository we include the code for implementing the mathematical model and running the simulations using PLAS software. …”

FWC python implementation by Roland Mühlenbernd (11755871)

Implementation of the SAACS in python. by Pavel Škrabánek (6106427)

Python code for estimating parameters of an ALAAM model. by Alex Stivala (8356257)

Coefficient of determination <i>R</i>² of ProSmith for different splitting scenarios of the Davis dataset. by Alexander Kroll (9304225)

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Performance metrics of ProSmith and previously published methods for the prediction of Michaelis constants <i>K</i>_M. by Alexander Kroll (9304225)

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ProSmith outperforms previous models in the prediction of Michaelis constants <i>K</i>_M especially for enzymes not highly similar to proteins in the training set. by Alexander Kroll (9304225)

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Source Code for the Hierarchical Key Assignment Scheme (HKAS) by Baris Celiktas (22804778)

Tools used in implementing the RNN models. by Fahmi H. Quradaa (17896527)

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Python code that implements the Hoshen Kopleman algorithm used to identify the clusters shown in Figs 9 and 10. by Leonardo Costa Ribeiro (10439243)

“…<p>Python code that implements the Hoshen Kopleman algorithm used to identify the clusters shown in Figs <a href="http://www.plosone.org/article/info:doi/10.1371/journal.pone.0285630#pone.0285630.g009" target="_blank">9</a> and <a href="http://www.plosone.org/article/info:doi/10.1371/journal.pone.0285630#pone.0285630.g010" target="_blank">10</a>.…”

Secure Python Code Manager: A Tool for Protected Python Code Distribution and Management by Pavel Izosimov (20096259)

“…</li><li><b>Commercial Distribution</b>: Safely share Python code with clients or customers, implementing advanced <b>Python code protection tools</b> for sales or rentals.…”

The optimal ProSmith models combine predictions based on the multimodal Transformer Network with predictions based on separate numerical representations of proteins and small molec... by Alexander Kroll (9304225)

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Analysis of the selected studies in terms of tools used for implementing RNN models. by Fahmi H. Quradaa (17896527)

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For accurate DTA predictions, ProSmith requires training on identical drugs but not on similar proteins. by Alexander Kroll (9304225)

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Drug-target affinity predictions improve with increasing drug similarity score compared to the training drugs. by Alexander Kroll (9304225)

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Data_Sheet_1_An Open-Source Tool for Anisotropic Radiation Therapy Planning in Neuro-oncology Using DW-MRI Tractography.pdf by Kesshi Jordan (7329089)

“…We present an open-source WMPL tool, implemented in the package Diffusion Imaging in Python (DIPY), and code to convert the resulting WMPL map to anisotropic contours for RT in a commercial treatment planning system. …”

Performance metrics for all three trained gradient boosting models with different input vectors and for their combined weighted mean prediction. by Alexander Kroll (9304225)

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