A list of all facial muscle movements mentioned in the chimpFACS manual [5] and considered in our present study. by Aisha Mahmoud (20623732)

A list of all facial muscle movements mentioned in the catFACS manual [14] and considered in our present study. by Aisha Mahmoud (20623732)

Flowchart representation of lion optimization algorithm for hyperparameter tuning in the HCAP model. by Mohanad Faeq Ali (21354273)

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ThermoPred: AI-Enhanced Quantum Chemistry Data Set and ML Toolkit for Thermochemical Properties of API-Like Compounds and Their Degradants by Diullio P. Santos (22770713)

“…All data sets, models and source code are freely available to support reproducibility and foster community-driven development.…”

Five Operator Lattice Simulation by James McDaniel (22522571)

“…<p dir="ltr">This dataset contains the Python simulation code and supporting documentation for the paper <i>A Five-Operator Lattice of Consciousness: A Logical Framework for Mediation Between Implicit and Explicit Processing</i> (McDaniel, 2025).…”

Optimizing Neuronal Calcium Flux Analysis: A Python Framework for Alzheimer's and TBI Studies by Huiying Huang (490768)

“…<p dir="ltr">This study presents a Python-based framework for analyzing calcium flux in cortical neurons, particularly in the context of Alzheimer’s disease and traumatic brain injury (TBI). …”

RNA Velocity model simulation results. (A) Simulation results for RNA Velocity model without delay ( samples). The simulation is composed of an up-regulation phase (both production... by Ziyan Jin (21021976)

Subjects:

Modeling lung cancer AST network and its perturbation with a SOX2 degrader. (A) Lung Cancer AST Network and the corresponding stochastic equations. Parameters are , , , , , , , , w... by Ziyan Jin (21021976)

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Supplemental code by Donald Warren (19435198)

“…Python code to perform many of the calculations presented in the manuscript…”

BaNDyT: Bayesian Network Modeling of Molecular Dynamics Trajectories by Elizaveta Mukhaleva (20602550)

“…We believe that BaNDyT is the first software package to include specialized and advanced features for analyzing MD simulation trajectories using a probabilistic graphical network model. We describe here the software’s uses, the methods associated with it, and a comprehensive Python interface to the underlying generalist BNM code. …”

BaNDyT: Bayesian Network Modeling of Molecular Dynamics Trajectories by Elizaveta Mukhaleva (20602550)

“…We believe that BaNDyT is the first software package to include specialized and advanced features for analyzing MD simulation trajectories using a probabilistic graphical network model. We describe here the software’s uses, the methods associated with it, and a comprehensive Python interface to the underlying generalist BNM code. …”

BaNDyT: Bayesian Network Modeling of Molecular Dynamics Trajectories by Elizaveta Mukhaleva (20602550)

“…We believe that BaNDyT is the first software package to include specialized and advanced features for analyzing MD simulation trajectories using a probabilistic graphical network model. We describe here the software’s uses, the methods associated with it, and a comprehensive Python interface to the underlying generalist BNM code. …”

Code and data for reproducing the results in the original paper of DML-Geo by Pengfei CHEN (8059976)

“…<p dir="ltr">This asset provides all the code and data for reproducing the results (figures and statistics) in the original paper of DML-Geo</p><h2>Main Files:</h2><p dir="ltr"><b>main.ipynb</b>: the main notebook to generate all the figures and data presented in the paper</p><p dir="ltr"><b>data_generator.py</b>: used for generating synthetic datasets to validate the performance of different models</p><p dir="ltr"><b>dml_models.py</b>: Contains implementations of different Double Machine Learning variants used in this study.…”

code implementing the finite element method and finite difference method from Hybrid PDE-ODE Models for Efficient Simulation of Infection Spread in Epidemiology by Kristina Maier (20520371)

“…This dataset contains code implementing the finite element method based on Kaskade 7 (C++) and code implementing the finite difference method (Python) for the development of hybrid PDE-ODE models aimed at efficiently simulating infection spread in epidemiology. …”

Mechanomics Code - JVT by Carlo Vittorio Cannistraci (5854046)

“…</p><p dir="ltr"><b>What is containing this repository</b></p><p dir="ltr">Data, MATLAB, R and Python code files in respective dedicated folders, specifically:</p><ul><li>Data: the 9 datasets that you need to run either of the MATLAB, R or Python scripts.…”

Python code for hierarchical cluster analysis of detected R-strategies from rule-based NLP on 500 circular economy definitions by Zahir Barahmand (18008947)

“…</p><p dir="ltr">This Python code was optimized and debugged using ChatGPT-4o to ensure implementation efficiency, accuracy, and clarity.…”

Workflow of segmentation model creation and application. by Vincent Hickl (16947429)

Comparative analysis of WordNet replacement impact on data distribution. by Enock Niyonkuru (21246879)

3D Structural Analysis of Human Hemoglobin by Efe can Orhan (22308964)

“…<p dir="ltr">This software project presents a 3D structural analysis of human hemoglobin using Python and py3Dmol. …”

Numerical data and codes for "Noisy Probabilistic Error Cancellation and Generalized Physical Implementability" by Tian-Ren Jin (18781930)

“…<p dir="ltr">This data set contains the data and codes for "Noisy Probabilistic Error Cancellation and Generalized Physical Implementability". We numerically simulate the bias of noisy probabilistic error cancellation with noisy Pauli operations and the bias of error model violation.…”