Simulation Code and Raw Data by Melih Özkurt (22278520)

“…<p dir="ltr">Reproducible code (Python) implementing a symmetrized split-step Fourier method (SSFM), with configuration files for all scans. …”

A Hybrid Ensemble-Based Parallel Learning Framework for Multi-Omics Data Integration and Cancer Subtype Classification by Mohammed Nasser Al-Andoli (21431681)

“…<p dir="ltr">The code supports replication of results on TCGA Pan-cancer and BRCA datasets and includes data preprocessing, model training, and evaluation scripts:<br>Python scripts for data preprocessing and integration</p><ul><li>Autoencoder implementation for multimodal feature learning</li><li>Hybrid ensemble training code (DL/ML models and meta-learner)</li><li>PSO and backpropagation hybrid optimization code</li><li>Parallel execution scripts</li><li>Instructions for replicating results on TCGA Pan-cancer and BRCA datasets</li></ul><p></p>…”

Dataset for: Phylotranscriptomics reveals the phylogeny of Asparagales and the evolution of allium flavor biosynthesis, Nature Communications，DOI：10.1038/s41467-024-53943-6 by Xiao-Xiao Wang (2447920)

“…Convert the aligned homolog groups from fasta format to phylip format using <i>phylpwrtr.py </i>(this script was deposited on this website).</p><p dir="ltr"><i>python /path_DISCO/phylpwrtr.py input.fa output.fa max_number_allowed_in_sequence_head</i></p><p dir="ltr"><i>python ca_disco.py -i a_text_file_includes_all_homolog_trees -o output.phy -a a_text_file_includes_the_path_of_aligned_homologs -t a_list_file_includes_names_of_the_501_samples -m min_number_of_taxon_allowed_for_each_ortholog</i></p><p dir="ltr">a_text_file_includes_all_homolog_trees: each line of this file include one homolog tree.…”

Data sets and coding scripts for research on sensory processing in ADHD and ASD by Vesko Varbanov (9687029)

“…</p><h4>Contents</h4><p dir="ltr">The repository includes:</p><ul><li>Questionnaire data (ASRS, BAPQ)</li><li>Visual orientation discrimination thresholds (vertical and oblique)</li><li>Demographic variables (age, gender)</li><li>Clinical vs. non-clinical group labels</li><li>Propensity score matching files and reproducible Python code</li><li>JASP analysis files and outputs</li><li>Study documentation and methodological details</li></ul><p dir="ltr">These data support the study’s finding that ADHD and ASD show distinct sensory signatures: clinical ADHD was associated with reduced oblique sensitivity, while clinical ASD showed enhanced vertical discrimination relative to matched non-clinical controls. …”

Bayesian Changepoint Detection via Logistic Regression and the Topological Analysis of Image Series by Andrew M. Thomas (712104)

“…The method also successfully recovers the location and nature of changes in more traditional changepoint tasks. An implementation of our method is available in the Python package bclr.…”

A Fully Configurable Open-Source Software-Defined Digital Quantized Spiking Neural Core Architecture by Nagarajan Kandasamy (8400168)

“…QUANTISENC’s software-defined hardware design methodology allows the user to train an SNN model using Python and evaluate performance of its hardware implementation, such as area, power, latency, and throughput. …”

Mean Annual Habitat Quality and Its Driving Variables in China (1990–2018) by ChenXi Zhu (21374876)

“…</p><p dir="ltr">(HQ: Habitat Quality; CZ: Climate Zone; FFI: Forest Fragmentation Index; GPP: Gross Primary Productivity; Light: Nighttime Lights; PRE: Mean Annual Precipitation Sum; ASP: Aspect; RAD: Solar Radiation; SLOPE: Slope; TEMP: Mean Annual Temperature; SM: Soil Moisture)</p><p dir="ltr"><br>A Python script used for modeling habitat quality, including mean encoding of the categorical variable climate zone (CZ), multicollinearity testing using Variance Inflation Factor (VIF), and implementation of four machine learning models to predict habitat quality.…”

Leveraging explainable causal artificial intelligence to study forest gross primary productivity dynamics in China's protected areas by Pedro Cabral (18947566)

“…<p dir="ltr">A Python script used for modeling forest GPP in China´s Protected Areas, including mean encoding of the categorical variable climate zone (CZ), multicollinearity testing using Variance Inflation Factor (VIF), implementation of four machine learning models to predict forest GPP, XAI and causality analysis.…”

PTPC v1.0 Numerical Baseline: Stable Multi-Bounce Cosmology Simulation by David Lewis Stewart Parry (22188211)

“…PTPC v1.0 Numerical Baseline: Stable Multi-Bounce Cosmology Simulation This release provides the complete, reproducible numerical implementation of the Parry Tensional Phase Collapse (PTPC) model — the dynamic core of the Universal Heartbeat Theory (UHT/PTPC). …”

Soulware-Lite by Abhiram Gnyanijaya (21572942)

“…It supports OpenAI GPT-4, Anthropic Claude, Google Gemini, Meta LLaMA, and other open-source models.</p><p><br></p><p dir="ltr">Soulware-Lite is the first live implementation of a cognitive conscience layer, born from architectural failures in AI output hallucination and anchored by integrity principles like MAP/ARP and RDIP. …”

Table 3_Novel deep learning-based prediction of HER2 expression in breast cancer using multimodal MRI, nomogram, and decision curve analysis.docx by Shi Qiu (425335)

“…Nomogram construction, ROC analysis, and DCA evaluation were performed to assess model performance. Statistical analyses were conducted using Python and R, with significance set at p < 0.05.…”

Table 2_Novel deep learning-based prediction of HER2 expression in breast cancer using multimodal MRI, nomogram, and decision curve analysis.docx by Shi Qiu (425335)

“…Nomogram construction, ROC analysis, and DCA evaluation were performed to assess model performance. Statistical analyses were conducted using Python and R, with significance set at p < 0.05.…”

Table 1_Novel deep learning-based prediction of HER2 expression in breast cancer using multimodal MRI, nomogram, and decision curve analysis.docx by Shi Qiu (425335)

“…Nomogram construction, ROC analysis, and DCA evaluation were performed to assess model performance. Statistical analyses were conducted using Python and R, with significance set at p < 0.05.…”

Data Sheet 1_Novel deep learning-based prediction of HER2 expression in breast cancer using multimodal MRI, nomogram, and decision curve analysis.docx by Shi Qiu (425335)

“…Nomogram construction, ROC analysis, and DCA evaluation were performed to assess model performance. Statistical analyses were conducted using Python and R, with significance set at p < 0.05.…”

Demonstration of Isosteric Heat of Adsorption Calculation using AIFs and pyGAPs by Jack Evans (11275386)

“…</p><p dir="ltr">The calculation is performed using the Clausius-Clapeyron method as implemented in the <code><strong>pyGAPS</strong></code> Python library for adsorption science. …”

Folder with all data and algorithms by Jorge Servert Lerdo de Tejada (22290001)

“…In this study, we present an open-source, Python-based computational framework that unifies photon transport modeling, probe geometry optimization, and photothermal safety assessment into a single workflow. …”

Summary of Tourism Dataset. by Jing Zhang (23775)

“…The implementation uses Python language on a tourism dataset comprising necessary attributes like visitor numbers, days, spending patterns, employment, international tourism samples over a specific region, and a diverse age group analyzed over a year. …”

Segment-wise Spending Analysis. by Jing Zhang (23775)

“…The implementation uses Python language on a tourism dataset comprising necessary attributes like visitor numbers, days, spending patterns, employment, international tourism samples over a specific region, and a diverse age group analyzed over a year. …”

Hyperparameter Parameter Setting. by Jing Zhang (23775)

“…The implementation uses Python language on a tourism dataset comprising necessary attributes like visitor numbers, days, spending patterns, employment, international tourism samples over a specific region, and a diverse age group analyzed over a year. …”

Marketing Campaign Analysis. by Jing Zhang (23775)

“…The implementation uses Python language on a tourism dataset comprising necessary attributes like visitor numbers, days, spending patterns, employment, international tourism samples over a specific region, and a diverse age group analyzed over a year. …”