Modeling lung cancer AST network and its perturbation with a SOX2 degrader. (A) Lung Cancer AST Network and the corresponding stochastic equations. Parameters are , , , , , , , , w... by Ziyan Jin (21021976)

Simulation Code and Raw Data by Melih Özkurt (22278520)

“…<p dir="ltr">Reproducible code (Python) implementing a symmetrized split-step Fourier method (SSFM), with configuration files for all scans. …”

Comparison of tools with features similar to <i>bmdrc,</i> and a descriptions of the modules within the <i>bmdrc</i> package.  by David J. Degnan (13886280)

“…The smaller boxes within the larger boxes represent individual functions within the <i><i>bmdrc</i></i> Python library.…”

software code of NeoDesign by Wenqian Yu (19730101)

“…<h2>Implementation and Dependencies</h2><p dir="ltr">neoDesign was developed with python (recommend>3.9) and shell (bash) language. …”

Reproducible Code and Data for figures by Bonyad Ahmadi (20750327)

“…</i></p><p dir="ltr">It contains:</p><p dir="ltr">✅ <b>Python Code</b> – Scripts used for data preprocessing, and visualization.…”

DA-Faster-RCNN code by Seunghyeon Wang (16500132)

“…The implementation is written in Python using PyTorch and Detectron2.…”

BlueRecording simulates hippocampal LFP. by Joseph James Tharayil (21416715)

The format of the electrode csv file by Joseph James Tharayil (21416715)

“…To enable efficient calculation of extracellular signals from large neural network simulations, we have developed <i>BlueRecording</i>, a pipeline consisting of standalone Python code, along with extensions to the Neurodamus simulation control application, the CoreNEURON computation engine, and the SONATA data format, to permit online calculation of such signals. …”

The format of the simulation reports by Joseph James Tharayil (21416715)

“…To enable efficient calculation of extracellular signals from large neural network simulations, we have developed <i>BlueRecording</i>, a pipeline consisting of standalone Python code, along with extensions to the Neurodamus simulation control application, the CoreNEURON computation engine, and the SONATA data format, to permit online calculation of such signals. …”

Comparison of BlueRecording with existing tools by Joseph James Tharayil (21416715)

“…To enable efficient calculation of extracellular signals from large neural network simulations, we have developed <i>BlueRecording</i>, a pipeline consisting of standalone Python code, along with extensions to the Neurodamus simulation control application, the CoreNEURON computation engine, and the SONATA data format, to permit online calculation of such signals. …”

The format of the weights file by Joseph James Tharayil (21416715)

“…To enable efficient calculation of extracellular signals from large neural network simulations, we have developed <i>BlueRecording</i>, a pipeline consisting of standalone Python code, along with extensions to the Neurodamus simulation control application, the CoreNEURON computation engine, and the SONATA data format, to permit online calculation of such signals. …”

Output datasets from ML–assisted bibliometric workflow in African phytochemical metabolomics research by Temitope Omogbene (18615415)

“…<p dir="ltr">This collection contains supplementary datasets generated during the machine learning–assisted bibliometric workflow for metabolomics and phytochemical research. The datasets represent sequential outputs derived from the integration and harmonisation of bibliographic metadata from <b>Scopus</b>, <b>Web of Science (WoS)</b>, and <b>Dimensions</b>, processed via R and Python environments.…”

Five Operator Lattice Simulation by James McDaniel (22522571)

“…<p dir="ltr">This dataset contains the Python simulation code and supporting documentation for the paper <i>A Five-Operator Lattice of Consciousness: A Logical Framework for Mediation Between Implicit and Explicit Processing</i> (McDaniel, 2025).…”

RealBench: A Repo-Level Code Generation Benchmark Aligned with Real-World Software Development Practices by RealBench RealBench (22275393)

“…<br>│ ├── model_gen/ # Code generation using various LLMs.<br>│ │ ├── generate/ # LLM inference implementations.…”

A game of life with dormancy - Code by Daniel Henrik Nevermann (20376933)

“…</p><ul><li>To run an animated simulation, use `python simulation.py'.</li><li>The implementation of Spore Life can be found in gol.py.…”

DeepB3Pred - code by Saleh Musleh (22263718)

Simple implementation examples of agent AI on free energy calculation and phase-field simulation by Toshiyuki Koyama (22828581)

“…</p> <p>Using Gibbs energy calculations and diffusion simulations as examples, we demonstrated the implementation method and usefulness of simple agent AI, where sample python codes are distributed as supplemental materials.…”

Testing Code for JcvPCA and JsvCRP. by Océane Dubois (21989812)

“…<p>This file contains the code that implements both metrics in python and apply them on a simulated dataset.…”

DeepB3Pred_source_code by Muhammad Arif (17012472)

Data and code for: Automatic fish scale analysis by Christian Vogelmann (21646472)

“…</p><h3>Includeed in this repository:</h3><ul><li><b>Raw data files:</b></li><li><code>comparison_all_scales.csv</code> – comparison_all_scales.csv - manually verified vs. automated measurements of 1095 coregonid scales</li></ul><ul><li><ul><li><code>Validation_data.csv</code> – manually measured scale data under binocular</li><li><code>Parameter_correction_numeric.csv</code> – calibration data (scale radius vs. fish length/weight)</li></ul></li><li><b>Statistical results:</b></li><li><ul><li><code>comparison_stats_core_variables.csv</code> – verification statistics (bias, relative error, limits of agreement)</li><li><code>Validation_statistics.csv</code> – summary statistics and model fits (manual vs. automated)</li></ul></li><li><b>Executable script (not GUI):</b></li><li><ul><li><code>Algorithm.py</code> – core processing module for scale feature extraction<br>→ <i>Note: The complete Coregon Analyzer application (incl. …”