Compartmental BNGL implementation of the SNARE complex model. حسب Adam Husar (18437351)

الموضوعات:

Left schematic of the XOR gate implementation [11]. حسب Fabricio Cravo (21387854)

الموضوعات:

Schematic example of multiscale modelling implementation. حسب Robyn M. Stuart (3754000)

Example model using BNGL. حسب Adam Husar (18437351)

الموضوعات:

Example of loading and running BNGL model in MCell4. حسب Adam Husar (18437351)

الموضوعات:

Propagating and passaging. حسب Robert Marsland (8616483)

Overview of MCell4 architecture. حسب Adam Husar (18437351)

الموضوعات:

Overview of MCell4 Scheduler. حسب Adam Husar (18437351)

الموضوعات:

Example of graph transformation with BNG reaction rules. حسب Adam Husar (18437351)

الموضوعات:

Running times of equivalent programs based on <i>TextFormats</i> or other libraries, implemented in Nim, Python, and C. حسب Giorgio Gonnella (6670052)

Listed python codes of our algorithm with explanations (Python 3.9 recommended). حسب Takayuki Niizato (162226)

Parallel pipeline elements. حسب Ramona Leenings (11167294)

Python code. حسب Kapil Newar (6533048)

SCADET algorithm parameter configuration (Python implementation). حسب Xiaolong Zhang (470454)

Implementations benchmark. حسب Serena Aneli (17002149)

AutoDock Vina 1.2.0: New Docking Methods, Expanded Force Field, and Python Bindings حسب Jerome Eberhardt (6311801)

الموضوعات:

Training the model on segmentation with custom weight maps. حسب Owen M. O’Connor (11965460)

A high-performance and highly reusable fast multipole method library and its application to solvation energy calculations at virus-scale حسب Tingyu Wang (12342757)

"…Featuring a kernel-independent variant of FMM, ExaFMM can readily extend to new kernels. We created a high-level Python interface with a modest effort due to a straightforward and standard software design. …"

Python file of the computational framework. حسب Benoit Haut (9753029)

Loss history of segmentation model trained over 600 epochs. حسب Owen M. O’Connor (11965460)