Genomic Surveillance of Pemivibart (VYD2311) Escape-Associated Mutations in SARS-CoV-2: December 2025 BioSamples (n=2) by Tahir Bhatti (20961974)

“…Full source code and version details are available upon request.…”

Soulware-Lite by Abhiram Gnyanijaya (21572942)

“…</p><p><br></p><p dir="ltr">The system is fully modular, built on Python + FastAPI, and integrated with Streamlit UI for visualizing alignment confidence and drift flags. …”

<b>Dataset for manuscript: </b><b>Phylogenetic and genomic insights into the evolution of terpenoid biosynthesis genes in diverse plant lineages</b> by Puguang Zhao (19023065)

“…</p><p dir="ltr"> 'boxplot.py': This script is executed in Visual Studio Code, using Python 3.10.4 as the runtime environment.…”

Social media images of China's terraces by Song Chen (19488280)

“…Geo-tagged images were collected using Weibo cookies and Python-based scraping tools (available at: https://github.com/dataabc/weibo-search). …”

<b>Rethinking neighbourhood boundaries for urban planning: A data-driven framework for perception-based delineation</b> by Shubham Pawar (22471285)

“…</p><p dir="ltr"><b>Input:</b></p><ul><li><code>svi_module/svi_data/svi_info.csv</code> - Image metadata from Step 1</li><li><code>perception_module/trained_models/</code> - Pre-trained models</li></ul><p dir="ltr"><b>Command:</b></p><pre><pre>python -m perception_module.pred \<br> --model-weights .…”

Sonification of Growing Black Hole by Rose Shepherd (20328444)

“…We used the open source Python package STRAUSS to produce the sonification (Trayford and Harrison 2023). …”

Digital Twin for Chemical Sciences by Jin Qian (19339035)

“…The procedure for generating data in Figure 3 can be found in the demo notebook in Supplementary Code. The procedure for generating data of Figure 4 has been uploaded in fig4_figshare.zip file. …”

Leue Modulation Coefficients (LMC): A Smooth Continuum Embedding of Bounded Arithmetic Data by Jeanette Leue (22470409)

“…This Zenodo package includes: the full research paper (PDF), a complete Python implementation generating the LMC field and conductivity model, a numerical plot comparing discrete LMC values with the smoothed continuum field, a cover letter and supporting documentation. …”

Attention and Cognitive Workload by Rui Varandas (11900993)

“…</p><p dir="ltr">The data for subject 2 do not include the 2nd part of the acquisition (python task) because the equipment stopped acquiring; subject 3 has the 1st (N-Back task and mental subtraction) and the 2nd part (python tutorial) together in the <code>First part</code> folder (file <code>D1_S3_PB_description.json</code> indicates the start and end of each task); subject 4 only has the mental subtraction task in the 1st part acquisition and in subject 8, the subtraction task data is included in the 2nd part acquisition, along with python task.…”

Sonification of Warming Stripes by Christopher Harrison (9448751)

“…The sonification was produced using the STRAUSS sonification Python package.</p><p dir="ltr">Here we release:<br>1. …”

Audio Datasets of belt conveyor rollers in mines by Juan Liu (19687435)

“…</li><li><b>Python Code: </b>This code validates the accuracy and usability of the audio feature datasets in real-time monitoring of belt conveyor roller operational states.…”

Advancing Solar Magnetic Field Modeling by Carlos António (21257432)

“…<br><br>We developed a significantly faster Python code built upon a functional optimization framework previously proposed and implemented by our team. …”

Genomic Epidemiology of SARS-CoV-2 in Peru from 2020 to 2024 by Pablo Tsukayama (22614461)

“…</p><p dir="ltr"><b>Contents:</b></p><p><b>1. Analysis Code</b></p><p>Core Python scripts used to curate metadata, process genomic data, perform lineage assignments, compute summary statistics, and prepare inputs for downstream phylogenetic and phylogeographic analyses. …”

Reinforcement Learning based traffic steering inOpen Radio Access Network (ORAN)- oran-ts GitHub Repository by Aaradhy Sharma (21503465)

“…<p dir="ltr">This repository contains the simulation codebase for research on <b>Reinforcement Learning (RL) based Traffic Steering and Resource Allocation in Open Radio Access Networks (O-RAN)</b>. It features a modular Python framework implementing various RL agents (Q-Learning, SARSA, N-Step SARSA, DQN) and a traditional baseline evaluated in a realistic cellular network environment. …”

MCCN Case Study 3 - Select optimal survey locality by Donald Hobern (21435904)

“…</p><p dir="ltr">This is a simple implementation that uses four environmental attributes imported for all Australia (or a subset like NSW) at a moderate grid scale:</p><ol><li>Digital soil maps for key soil properties over New South Wales, version 2.0 - SEED - see <a href="https://esoil.io/TERNLandscapes/Public/Pages/SLGA/ProductDetails-SoilAttributes.html" target="_blank">https://esoil.io/TERNLandscapes/Public/Pages/SLGA/ProductDetails-SoilAttributes.html</a></li><li>ANUCLIM Annual Mean Rainfall raster layer - SEED - see <a href="https://datasets.seed.nsw.gov.au/dataset/anuclim-annual-mean-rainfall-raster-layer" target="_blank">https://datasets.seed.nsw.gov.au/dataset/anuclim-annual-mean-rainfall-raster-layer</a></li><li>ANUCLIM Annual Mean Temperature raster layer - SEED - see <a href="https://datasets.seed.nsw.gov.au/dataset/anuclim-annual-mean-temperature-raster-layer" target="_blank">https://datasets.seed.nsw.gov.au/dataset/anuclim-annual-mean-temperature-raster-layer</a></li></ol><h4><b>Dependencies</b></h4><ul><li>This notebook requires Python 3.10 or higher</li><li>Install relevant Python libraries with: <b>pip install mccn-engine rocrate</b></li><li>Installing mccn-engine will install other dependencies</li></ul><h4><b>Overview</b></h4><ol><li>Generate STAC metadata for layers from predefined configuratiion</li><li>Load data cube and exclude nodata values</li><li>Scale all variables to a 0.0-1.0 range</li><li>Select four layers for comparison (soil organic carbon 0-30 cm, soil pH 0-30 cm, mean annual rainfall, mean annual temperature)</li><li>Select 10 random points within NSW</li><li>Generate 10 new layers representing standardised environmental distance between one of the selected points and all other points in NSW</li><li>For every point in NSW, find the lowest environmental distance to any of the selected points</li><li>Select the point in NSW that has the highest value for the lowest environmental distance to any selected point - this is the most different point</li><li>Clean up and save results to RO-Crate</li></ol><p><br></p>…”

Moulin distributions during 2016-2021 on the southwest Greenland Ice Sheet by Kang Yang (7323734)

“…</p><p><br></p><ul><li>00_Satellite-derived moulins: Moulins directly mapped from Sentinel-2 imagery, representing actual moulin positions;</li><li>01_Snapped moulins: Moulins snapped to DEM-modeled supraglacial drainage networks, primarily used for analyses;</li><li>02_Moulin recurrences: Recurring moulins determined from the snapped moulins;</li><li>03_Internally drained catchments: Internally drained catchment (IDC) associated with each moulin;</li><li>04_Surface meltwater runoff: surface meltwater runoff calculated from MAR for the study area, elevation bins, and IDCs; </li><li>05_DEM-derived: Topographic features modeled from ArcticDEM, including elevation bins, depressions and drainage networks;</li><li>06_GWR: Variables for conducting geographically weighted regression (GWR) analysis;</li></ul><p><br></p><ul><li>Code_01_Mapping moulins on the southwestern GrIS.ipynb: A Jupyter Notebook to analyze moulin distributions, reproducing most of the analyses and figures presented in the manuscript using the provided datasets;</li><li>Code_02_pre1_calculate Strain Rate from XY ice velocity.py: A preprocessing Python script to calculate strain rate for the GWR analysis;</li><li>Code_02_pre2_calculate Driving Stress from ice thickness and surface slope.py: A preprocessing Python script to calculate driving stress for the GWR analysis;</li><li>Code_02_GWR analysis.ipynb: A Jupyter Notebook to conduct the GWR analysis using the provided datasets.…”

Supervised Classification of Burned Areas Using Spectral Reflectance and Machine Learning by Baptista Boanha (22424668)

“…Six Python scripts are provided, each implementing a distinct machine learning algorithm—Random Forest, k-Nearest Neighbors (k-NN), Multi-Layer Perceptron (MLP), Decision Tree, Naïve Bayes, and Logistic Regression. …”

Thermally Activated Resonant Tunnelling in GaAs/AlGaAs Triple Barrier Heterostructures by Craig Allford (19079081)

“…Measurements were automated using bespoke written python code.<br><br>Results are published in the article at http://iopscience.iop.org/0268-1242/30/10/105035 <br>…”

Global Aridity Index and Potential Evapotranspiration (ET0) Database: Version 3.1 by Robert Zomer (12796235)

“…</p><p dir="ltr">The Python programming source code used to run the calculation of ET0 and AI is provided and available online on Figshare at:</p><p dir="ltr">https://figshare.com/articles/software/Global_Aridity_Index_and_Potential_Evapotranspiration_Climate_Database_v3_-_Algorithm_Code_Python_/20005589</p><p dir="ltr">Peer-Review Reference and Proper Citation:</p><p dir="ltr">Zomer, R.J.; Xu, J.; Trabuco, A. 2022. …”

Supplementary material for "Euler inversion: Locating sources of potential-field data through inversion of Euler's homogeneity equation" by Leonardo Uieda (97471)

“…</p><h2>License</h2><p dir="ltr">All Python source code (including <code>.py</code> and <code>.ipynb</code> files) is made available under the MIT license. …”