DeepB3Pred_source_code حسب Muhammad Arif (17012472)

Code حسب Baoqiang Chen (21099509)

"…We divided the dataset into training and test sets, using 70% of the genes for training and 30% for testing. We implemented machine learning algorithms using the following R packages: rpart for Decision Trees, gbm for Gradient Boosting Machines (GBM), ranger for Random Forests, the glm function for Generalized Linear Models (GLM), and xgboost for Extreme Gradient Boosting (XGB). …"

RNA Velocity model simulation results. (A) Simulation results for RNA Velocity model without delay ( samples). The simulation is composed of an up-regulation phase (both production... حسب Ziyan Jin (21021976)

الموضوعات:

Modeling lung cancer AST network and its perturbation with a SOX2 degrader. (A) Lung Cancer AST Network and the corresponding stochastic equations. Parameters are , , , , , , , , w... حسب Ziyan Jin (21021976)

الموضوعات:

Scripts, data and figures underpinning 'Towards the Creation of Legible Octilinear Power Grid Diagrams Using Mixed Integer Linear Programming' حسب Paul Cuffe (2937081)

"…<p dir="ltr">These Python notebooks implement the techniques described in the paper "Towards the Creation of Legible Octilinear Power Grid Diagrams Using Mixed Integer Linear Programming".…"

BaNDyT: Bayesian Network Modeling of Molecular Dynamics Trajectories حسب Elizaveta Mukhaleva (20602550)

"…We believe that BaNDyT is the first software package to include specialized and advanced features for analyzing MD simulation trajectories using a probabilistic graphical network model. We describe here the software’s uses, the methods associated with it, and a comprehensive Python interface to the underlying generalist BNM code. …"

BaNDyT: Bayesian Network Modeling of Molecular Dynamics Trajectories حسب Elizaveta Mukhaleva (20602550)

"…We believe that BaNDyT is the first software package to include specialized and advanced features for analyzing MD simulation trajectories using a probabilistic graphical network model. We describe here the software’s uses, the methods associated with it, and a comprehensive Python interface to the underlying generalist BNM code. …"

BaNDyT: Bayesian Network Modeling of Molecular Dynamics Trajectories حسب Elizaveta Mukhaleva (20602550)

"…We believe that BaNDyT is the first software package to include specialized and advanced features for analyzing MD simulation trajectories using a probabilistic graphical network model. We describe here the software’s uses, the methods associated with it, and a comprehensive Python interface to the underlying generalist BNM code. …"

Code and data for reproducing the results in the original paper of DML-Geo حسب Pengfei CHEN (8059976)

"…<p dir="ltr">This asset provides all the code and data for reproducing the results (figures and statistics) in the original paper of DML-Geo</p><h2>Main Files:</h2><p dir="ltr"><b>main.ipynb</b>: the main notebook to generate all the figures and data presented in the paper</p><p dir="ltr"><b>data_generator.py</b>: used for generating synthetic datasets to validate the performance of different models</p><p dir="ltr"><b>dml_models.py</b>: Contains implementations of different Double Machine Learning variants used in this study.…"

SEPARATE Code Repository حسب Gyuri Kim (21424973)

Reproducible Code and Data for figures حسب Bonyad Ahmadi (20750327)

"…</i></p><p dir="ltr">It contains:</p><p dir="ltr">✅ <b>Python Code</b> – Scripts used for data preprocessing, and visualization.…"

software code of NeoDesign حسب Wenqian Yu (19730101)

"…<h2>Implementation and Dependencies</h2><p dir="ltr">neoDesign was developed with python (recommend>3.9) and shell (bash) language. …"

DA-Faster-RCNN code حسب Seunghyeon Wang (16500132)

"…The implementation is written in Python using PyTorch and Detectron2.…"

Workflow of segmentation model creation and application. حسب Vincent Hickl (16947429)

Simulation Code and Raw Data حسب Melih Özkurt (22278520)

"…<p dir="ltr">Reproducible code (Python) implementing a symmetrized split-step Fourier method (SSFM), with configuration files for all scans. …"

The format of the electrode csv file حسب Joseph James Tharayil (21416715)

"…To enable efficient calculation of extracellular signals from large neural network simulations, we have developed <i>BlueRecording</i>, a pipeline consisting of standalone Python code, along with extensions to the Neurodamus simulation control application, the CoreNEURON computation engine, and the SONATA data format, to permit online calculation of such signals. …"

The format of the simulation reports حسب Joseph James Tharayil (21416715)

"…To enable efficient calculation of extracellular signals from large neural network simulations, we have developed <i>BlueRecording</i>, a pipeline consisting of standalone Python code, along with extensions to the Neurodamus simulation control application, the CoreNEURON computation engine, and the SONATA data format, to permit online calculation of such signals. …"

Comparison of BlueRecording with existing tools حسب Joseph James Tharayil (21416715)

"…To enable efficient calculation of extracellular signals from large neural network simulations, we have developed <i>BlueRecording</i>, a pipeline consisting of standalone Python code, along with extensions to the Neurodamus simulation control application, the CoreNEURON computation engine, and the SONATA data format, to permit online calculation of such signals. …"

The format of the weights file حسب Joseph James Tharayil (21416715)

"…To enable efficient calculation of extracellular signals from large neural network simulations, we have developed <i>BlueRecording</i>, a pipeline consisting of standalone Python code, along with extensions to the Neurodamus simulation control application, the CoreNEURON computation engine, and the SONATA data format, to permit online calculation of such signals. …"

The codes and data for "Lane Extraction from Trajectories at Road Intersections Based on Graph Transformer Network" حسب Chongshan Wan (19247614)

"…</p><h3><b>Model training</b></h3><h4><code>python train_GTN.py</code></h4><p dir="ltr">This step trains the GTN model. …"