Reproducible implementation for article: Reproducibility study of the modular and reusable model of epithelial transport in the proximal convoluted tubule by Leyla Noroozbabaee (14301173)

The logical blocks of the epithelial model implementation. by Leyla Noroozbabaee (14100772)

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Proximal tubule cells showing coupled transport pathways and some ion channels within the luminal and peritubular cell membranes. by Leyla Noroozbabaee (14100772)

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A comparison between the solutions obtained with the present W-PCT-E model and the model reported in [12]. by Leyla Noroozbabaee (14100772)

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Changes in the membrane fluxes and cellular concentrations due to the inhibition of transporters on the cell-basal and cell-lateral membranes. by Leyla Noroozbabaee (14100772)

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Changes in the membrane fluxes and cellular concenting rations due to the inhibition of transporters on the apical cell membrane. by Leyla Noroozbabaee (14100772)

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Total epithelial sodium fluxes and the contribution of various sodium flux types. by Leyla Noroozbabaee (14100772)

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Fig 5 - by Leyla Noroozbabaee (14100772)

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S1 File - by Leyla Noroozbabaee (14100772)

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Schematic representation of the proximal convoluted tubule (PCT) epithelium, consisting of cell and lateral intercellular space, and a tubule model, in the way lumen is lined by ep... by Leyla Noroozbabaee (14100772)

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Total epithelial chloride fluxes for the W-PCT-E model. by Leyla Noroozbabaee (14100772)

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FWC python implementation by Roland Mühlenbernd (11755871)

Implementation of the SAACS in python. by Pavel Škrabánek (6106427)

Python software for calculating the area under a curve by Wenfa Ng (444092)

“…Modularity in the software code ensures that the Python software can be readily adapted to calculate the area under the curve for other mathematical functions. …”

CPPE: An Open-Source C++ and Python Library for Polarizable Embedding by Maximilian Scheurer (4580110)

“…The library is implemented in C++, and it additionally provides a Python interface for rapid prototyping and experimentation in a high-level scripting language. …”

A Python implementation of Gardner's model by Quentin Brissaud (12461415)

“…<p>A Python implementation of Gardner's model to generate atmospheric gravity-wave perturbations</p>…”

SCADET algorithm parameter configuration (Python implementation). by Xiaolong Zhang (470454)

“…<p>SCADET algorithm parameter configuration (Python implementation).</p>…”

EthoPy: Reproducible Behavioral Neuroscience Made Simple by Alexandros Evangelou (22235917)

“…To overcome these challenges, we developed EthoPy, an open-source, Python-based behavioral control framework that integrates stimulus presentation, hardware management, and data logging. …”

Python Jupyter notebook implementing similar neural networks. by Pierre-Philippe Dechant (10751360)

PyLandStats: An open-source Pythonic library to compute landscape metrics by Martí Bosch (8087852)

“…The PyLandStats package provides a set of methods to quantify landscape patterns, such as the analysis of the spatiotemporal patterns of land use/land cover change or zonal analysis. The implementation is based on the prevailing Python libraries for geospatial data analysis in a way that they can be forthwith integrated into complex computational workflows. …”