Simplified calculation methods produce inaccurate signals. by Joseph James Tharayil (21416715)

BlueRecording simulates whisker-flick EEG. by Joseph James Tharayil (21416715)

BlueRecording simulates hippocampal LFP. by Joseph James Tharayil (21416715)

CompuCrawl: Full database and code by Richard Haans (6324669)

“…<p><br></p><p dir="ltr">This folder contains the full set of code and data for the CompuCrawl database. The database contains the archived websites of publicly traded North American firms listed in the Compustat database between 1996 and 2020—representing 11,277 firms with 86,303 firm/year observations and 1,617,675 webpages in the final cleaned and selected set.…”

Catalogue of compact radio sources in Messier-82 from e-MERLIN observations by Sibongumusa Shungube (21197363)

“…Source finding was initially performed using Python Blob Detection and Source Finder (PyBDSF).</p><p dir="ltr">The dataset includes two tables detailing the properties of these 36 sources:</p><p dir="ltr"><b>Table 3.1: CASA </b><code><strong>imfit</strong></code><b> Source Catalogue</b></p><p dir="ltr">This table contains source parameters derived using the CASA task <code>imfit</code>. …”

PTPC-UHT bounce by David Parry (22169299)

“…<br>It contains the full Python implementation of the PTPC bounce model (<code>PTPC_UHT_bounce.py</code>) and representative outputs used to generate the figures in the paper. …”

Data for "A hollow fiber membrane permeance evaluation device demonstrating outside-in and inside-out performance differences" by Timothy Warner (20222838)

“…</li><li>Plot data derived from the above data sources.</li><li>Python code to generate figures from the plot data.…”

Computing speed and memory usage. by David Berling (22170661)

“…<b>(b)</b> Physical memory consumption depending on simulated plane in radial and depth direction. Color coding same as in (a). Memory consumption was recorded as the maximum resident size during simulation monitored with the Python built-in module resource. …”

Replication package for Exploring the relation between source code commit information and SonarQube issues by Liviu Marian Berciu (17797934)

“…<p dir="ltr">This item represents a replication package/dataset for the article `Exploring the relation between source code commit information and SonarQube issues`. …”

R codes and curated dataset for “EnoLEX: A Diachronic Lexical Database for the Enggano Language” by Gede Primahadi Wijaya Rajeg (14592023)

“…</p><blockquote><b><i>EnoLEX</i></b><i> represents a network of independent research materials consisting of a </i><a href="https://doi.org/10.25446/oxford.28295648.v1" rel="noreferrer" target="_blank"><i>source dataset</i></a><i>, this repository of source R codes and the curated data, the </i><a href="https://enggano.shinyapps.io/enolex/" rel="noreferrer" target="_blank"><i>online database</i></a><i>, and a conference </i><a href="https://doi.org/10.25446/oxford.27013864.v1" rel="noreferrer" target="_blank"><i>paper</i></a><i>.…”

Workflow of a typical Epydemix run. by Nicolò Gozzi (8837522)

“…<div><p>We present Epydemix, an open-source Python package for the development and calibration of stochastic compartmental epidemic models. …”

Smart contract and interface code for Nature Energy "A general form of smart contract for decentralised energy systems management" by Lee Thomas (19655773)

“…This provides the modelled electricity network cost data, the smart contract code, and the Python interface scripts described in the Nature Energy Paper  "A general form of smart contract for decentralised energy systems management." …”

<b>Data and Code from 'The Perfect and Legitimate Bribe': A Transparent Record of Human-AI Collaboration in Legal Scholarship</b> by Joshua Stern (21748181)

“…</p><p dir="ltr">For optimal viewing of `collated-anonymized.txt`, a text editor that can handle long lines without word wrapping is recommended to preserve the indentation that represents the conversational branching structure.</p><p><br></p><p dir="ltr">### **Running Code/Software**</p><p dir="ltr">The provided scripts (`collator-ipynb.txt` and `sentence-ancestry-ipynb.txt`) are Jupyter Notebooks and require a Python 3 environment to run. …”

Data and code from: Hatchery-reared coho salmon develop less otolith deformities in tanks with alternating water flow directions by Leigh Gaffney (1389855)

“…</li><li>Measurements were generated by manually classifying otolith regions in Adobe Photoshop and calculating pixel coverage using a Python script.</li><li>Representative otolith images and details of the classification workflow are provided in the main manuscript figures and Methods section. …”

Prism and scutoid cell shape. by Sophie Theis (4126453)

Application to Drosophila gastrulation. by Sophie Theis (4126453)

Data and Code repository for the paper: <b>Visual loom caused by self- or object-movement elicits distinct responses in mouse superior colliculus</b> by Stefano Zucca (21686006)

“…Binned rates were transformed into z-scores by normalizing to the mean and standard deviation of firing rate across all stimulus conditions.</p><h2>Code Description</h2><p dir="ltr">Shared code contains both MATLAB and Python functions used in the analysis provided in the study. …”

Code and parameter package for long-term mapping and object-based typing of freeze–thaw colluvial deposits (1990–2024) along the Yunnan–Tibet corridor by Hui Ye (22308559)

“…Tested with Python 3.x/ArcGIS Pro (ArcPy) and the GEE Code Editor. …”

<b>Code: Inferred movements of SARS-CoV-2 infections between the 25 administrative regions of Peru (Figure 3) + </b><b>International spread of four SARS-CoV-2 sub-lineages of Peruv... by Pablo Tsukayama (22614461)

Efficient, Hierarchical, and Object-Oriented Electronic Structure Interfaces for Direct Nonadiabatic Dynamics Simulations by Sascha Mausenberger (22225772)

“…We present a novel, flexible framework for electronic structure interfaces designed for nonadiabatic dynamics simulations, implemented in Python 3 using concepts of object-oriented programming. …”