Reproducible implementation for article: Reproducibility study of the modular and reusable model of epithelial transport in the proximal convoluted tubule by Leyla Noroozbabaee (14301173)

SCADET algorithm parameter configuration (Python implementation). by Xiaolong Zhang (470454)

EthoPy: Reproducible Behavioral Neuroscience Made Simple by Alexandros Evangelou (22235917)

“…To overcome these challenges, we developed EthoPy, an open-source, Python-based behavioral control framework that integrates stimulus presentation, hardware management, and data logging. …”

Results obtained from the Bistable Gut Inflammation Detector model. by Fabricio Cravo (21387854)

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(a) System dynamics: schematic representation of all the reactions in the Tree model, which are aging, reproduction, color cycle, and competition. by Fabricio Cravo (21387854)

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Resolving Harvesting Errors in Institutional Repository Migration : Using Python Scripts with VS Code and LLM Integration. by satoshi hashimoto(橋本 郷史) (18851272)

“…Therefore, we decided to create a dedicated Python program using Large Language Model (LLM)-assisted coding.…”

Left schematic of the XOR gate implementation [11]. by Fabricio Cravo (21387854)

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Simulated dynamics of the Mutual Annihilation protocol [26]. by Fabricio Cravo (21387854)

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Heatmap showing the simulated output of the XOR circuit by Tamsir <i>et al</i>. [11]. by Fabricio Cravo (21387854)

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Simulation results for the phage communication circuit from Pathania <i>et al</i>. [5]. by Fabricio Cravo (21387854)

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Matching products with reactants for the example meta-reaction where S1 and S2 are distinct meta-species. by Fabricio Cravo (21387854)

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Simulation results of the quorum sensing circuit by Omar Din <i>et al</i>. [28]. by Fabricio Cravo (21387854)

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Performance Benchmark: SBMLNetwork vs. SBMLDiagrams Auto-layout. by Adel Heydarabadipour (22290905)

“…<p>Log–log plot of median wall-clock time for SBMLNetwork’s C++-based auto-layout engine (blue circles, solid fit) and SBMLDiagrams’ implementation of the pure-Python NetworkX spring_layout algorithm (red squares, dashed fit), applied to synthetic SBML models containing 20–2,000 species, with a fixed 4:1 species-to-reaction ratio. …”

City-level GDP estimates for China under alternative pathways from 2020 to 2100-python code by Jinjie Sun (11791715)

“…The dataset is complemented by processing code and raw input data in the "Python_Code" directory to ensure full reproducibility. …”

Comparison of performance between our next reaction implementation and the Python library from Ref. [3]. by Samuel Cure (22250922)

PythonForRoyalSociety.py from The formation energy of triple lines by Paul Twine (22587761)

Steering system model. by Honglei Pang (22693724)

“…<div><p>Vehicle lateral stability control under hazardous operating conditions represents a pivotal challenge in intelligent driving active safety. …”

Braking system model. by Honglei Pang (22693724)

“…<div><p>Vehicle lateral stability control under hazardous operating conditions represents a pivotal challenge in intelligent driving active safety. …”

Reaction Alignment of the Tricarboxylic Acid (TCA) Cycle Network. by Adel Heydarabadipour (22290905)

Python implementation of a wildfire propagation example using m:n-CAk over Z and R. by Pau Fonseca i Casas (9507338)

“…<p dir="ltr"># m:n-CAk Wildfire Simulation Project</p><p dir="ltr"><br></p><p dir="ltr">## Overview</p><p dir="ltr">This project simulates the spread of a wildfire using a cellular automaton model based on m:n-CAk. The simulation takes into account various factors such as vegetation type, and humidity levels, to model the propagation of the fire over a landscape. …”