Reproducible implementation for article: Reproducibility study of the modular and reusable model of epithelial transport in the proximal convoluted tubule by Leyla Noroozbabaee (14301173)

The logical blocks of the epithelial model implementation. by Leyla Noroozbabaee (14100772)

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Heat-map in this figure represented as row and columns. by Solomon Shiferaw Beyene (9143178)

Heat-map in this figure represented as row-normalized <i>k</i>-mer counting distribution. by Solomon Shiferaw Beyene (9143178)

System Hardware ID Generator Script: A Cross-Platform Hardware Identification Tool by Pavel Izosimov (20096259)

“…</li><li><b>Cross-Platform Compatibility</b>: Designed with cross-platform functionality in mind, the script works seamlessly on Windows, macOS, Linux, Unix, and other operating systems where Python 3.6 or higher is installed.</li><li><b>Modular Design</b>: The script can be used as a standalone tool or imported as a module into other Python projects, enabling developers to easily integrate hardware identification into their applications.…”

Proximal tubule cells showing coupled transport pathways and some ion channels within the luminal and peritubular cell membranes. by Leyla Noroozbabaee (14100772)

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A comparison between the solutions obtained with the present W-PCT-E model and the model reported in [12]. by Leyla Noroozbabaee (14100772)

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Changes in the membrane fluxes and cellular concentrations due to the inhibition of transporters on the cell-basal and cell-lateral membranes. by Leyla Noroozbabaee (14100772)

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Changes in the membrane fluxes and cellular concenting rations due to the inhibition of transporters on the apical cell membrane. by Leyla Noroozbabaee (14100772)

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Total epithelial sodium fluxes and the contribution of various sodium flux types. by Leyla Noroozbabaee (14100772)

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Fig 5 - by Leyla Noroozbabaee (14100772)

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S1 File - by Leyla Noroozbabaee (14100772)

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Schematic representation of the proximal convoluted tubule (PCT) epithelium, consisting of cell and lateral intercellular space, and a tubule model, in the way lumen is lined by ep... by Leyla Noroozbabaee (14100772)

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Total epithelial chloride fluxes for the W-PCT-E model. by Leyla Noroozbabaee (14100772)

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EthoPy: Reproducible Behavioral Neuroscience Made Simple by Alexandros Evangelou (22235917)

“…To overcome these challenges, we developed EthoPy, an open-source, Python-based behavioral control framework that integrates stimulus presentation, hardware management, and data logging. …”

Results derived from <i>D</i>-SPR analysis at 25°C: <i>D</i>-SPR values refer to the <i>D</i> calculated with the Python script; <i>error</i> column reports the standard deviation values and represents the variability within the mean of four experimental replicates. by Gabriele Antonio Zingale (12463357)

“…<p>Results derived from <i>D</i>-SPR analysis at 25°C: <i>D</i>-SPR values refer to the <i>D</i> calculated with the Python script; <i>error</i> column reports the standard deviation values and represents the variability within the mean of four experimental replicates.…”

Modeling with uniform <i>σ</i> values. by Giacomo Janson (8138517)

Results derived from <i>D</i>-SPR analysis of the lysozyme (349μM) at 25°C: <i>D</i>-SPR values refer to the <i>D</i> calculated with the Python script described previously; the <i>error</i> column reports the standard deviation values and represents the variability within the mean of four experimental replicates; values are consistent with the ones reported in the existing literature [13]. by Gabriele Antonio Zingale (12463357)

“…<p>Results derived from <i>D</i>-SPR analysis of the lysozyme (349μM) at 25°C: <i>D</i>-SPR values refer to the <i>D</i> calculated with the Python script described previously; the <i>error</i> column reports the standard deviation values and represents the variability within the mean of four experimental replicates; values are consistent with the ones reported in the existing literature [<a href="http://www.plosone.org/article/info:doi/10.1371/journal.pone.0312594#pone.0312594.ref013" target="_blank">13</a>].…”

Python software for calculating the area under a curve by Wenfa Ng (444092)

“…Modularity in the software code ensures that the Python software can be readily adapted to calculate the area under the curve for other mathematical functions. …”

PathOlOgics_RBCs Python Scripts.zip by Ahmed Elsafty (16943883)