Simple steps to use the FastCloneAssist tool. by Pradip Kumar Singh (20875050)

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List of primers designed using FastCloneAssist tool. by Pradip Kumar Singh (20875050)

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A comparison between the static Python-based visualizations of the p65 activity in activated fibroblasts and the dynamic, HTML-based visualizations that use these same reduction me... by Hector Torres (11708207)

“…<p><b>(a)</b> UMAP, t-SNE, PCA, and Diffmap were first generated using the Python libraries Scikit-learn, UMAP, and PyDiffmap within Jupyter to generate static graphs as a starting point. …”

Python code for calculating diversity measures and correlations. by Niloufar Abhari (20384374)

Representative MSD plots, Fig. 6c,d by Hirotake Udono (21008660)

Data for "A hollow fiber membrane permeance evaluation device demonstrating outside-in and inside-out performance differences" by Timothy Warner (20222838)

“…</li><li>Flux decline data generated by the analysis software.</li><li>Plot data derived from the above data sources.</li><li>Python code to generate figures from the plot data.…”

Pseudo live-stream of EEG data is generated, and a simple pick-and-place flowchart is designed for channel selection and filtering. by Gursimran Singh (575288)

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DynamiSpectra: A Python Software Package and Web Platform for Molecular Dynamics Data Analysis in Computational Biology by Iverson Conrado Bezerra (19555596)

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DynamiSpectra: A Python Software Package and Web Platform for Molecular Dynamics Data Analysis in Computational Biology by Iverson Conrado Bezerra (19555596)

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Introduction to Python for getting things done by John Porter (7046763)

Script_FastCloneAssist_Colab_VS02.ipynb. by Pradip Kumar Singh (20875050)

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Script_FastCloneAssist_VS02.ipynb. by Pradip Kumar Singh (20875050)

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Example Report for FC_Class 1.txt. by Pradip Kumar Singh (20875050)

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FastCloneAssist primer design scheme. by Pradip Kumar Singh (20875050)

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Example sequences from the case study. by Pradip Kumar Singh (20875050)

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Example Report for FC_Class 2.txt. by Pradip Kumar Singh (20875050)

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PyGMT – Accessing and Integrating GMT with Python and the Scientific Python Ecosystem (AGU24, U12B-05) by Yvonne Fröhlich (20442683)

“…<p dir="ltr"><b>Abstract</b></p><p dir="ltr">The Generic Mapping Tools (GMT) are widely used across the Earth, Ocean, and Planetary Sciences and beyond to process geospatial and geophysical data as well as produce high-quality (static) vector and raster plots and maps. …”

FibrilGen: A Python Package for Atomistic Modeling of Peptide β‑Sheet Nanostructures by Chao-Yu Yang (847201)

“…For <i>de novo</i> peptide-based nanomaterials that rely on the rational design of the peptide primary sequence, a systematic approach to computationally model the diverse and complex potential nanostructures formed by self-assembling peptides would be of considerable value. Here, we present FibrilGen, a bespoke Python package capable of building a broad range of cross-β morphologies at the atomic level. …”

FibrilGen: A Python Package for Atomistic Modeling of Peptide β‑Sheet Nanostructures by Chao-Yu Yang (847201)

“…For <i>de novo</i> peptide-based nanomaterials that rely on the rational design of the peptide primary sequence, a systematic approach to computationally model the diverse and complex potential nanostructures formed by self-assembling peptides would be of considerable value. Here, we present FibrilGen, a bespoke Python package capable of building a broad range of cross-β morphologies at the atomic level. …”

Photoelectron Metrology (LBNL Oct 2024) by Paul Hockett (100955)

“…The work is enabled by various tools on both the theory and experimental side; recent work has focussed on the development of a suite of open-source python tools - the Photoelectron Metrology Toolkit - and application to various problems, and this will form the main topic of the talk. …”