Comparison of performance between our next reaction implementation and the Python library from Ref. [3]. by Samuel Cure (22250922)

Python code for estimating parameters of an ALAAM model. by Alex Stivala (8356257)

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Example change statistic implementations. by Alex Stivala (8356257)

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EFGs: A Complete and Accurate Implementation of Ertl’s Functional Group Detection Algorithm in RDKit by Gonzalo Colmenarejo (650249)

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An example Python input file for the CA4 binder design. by Jakub Lála (17136205)

Representative MSD plots, Fig. 6c,d by Hirotake Udono (21008660)

Cost functions implemented in Neuroptimus. by Máté Mohácsi (20469514)

“…To address these issues, we developed a generic platform (called Neuroptimus) that allows users to set up neural parameter optimization tasks via a graphical interface, and to solve these tasks using a wide selection of state-of-the-art parameter search methods implemented by five different Python packages. …”

Models estimated using ALAAMEE for the Deezer networks, with liking jazz as the outcome variable. by Alex Stivala (8356257)

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Configurations used in ALAAMs for undirected networks. by Alex Stivala (8356257)

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Type II error rate from estimation of simulated outcomes using the EE algorithm. by Alex Stivala (8356257)

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Comparison of MPNet and ALAAMEE software for ALAAM estimation. by Alex Stivala (8356257)

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ALAAM models for the Deezer networks, with liking “alternative” music as the outcome variable. by Alex Stivala (8356257)

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Configurations used in ALAAMs for directed networks. by Alex Stivala (8356257)

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Type I error rate from estimation of simulated outcomes using the EE algorithm. by Alex Stivala (8356257)

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Example ALAAMEE output. by Alex Stivala (8356257)

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Type II error rate as the number of runs used for each sample is varied. by Alex Stivala (8356257)

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Parameter estimates and estimated standard errors from the EE algorithm. by Alex Stivala (8356257)

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Network descriptive statistics for the Deezer networks. by Alex Stivala (8356257)

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Example ALAAMEE goodness-of-fit output. by Alex Stivala (8356257)

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(a) System dynamics: schematic representation of all the reactions in the Tree model, which are aging, reproduction, color cycle, and competition. by Fabricio Cravo (21387854)