BaNDyT: Bayesian Network Modeling of Molecular Dynamics Trajectories حسب Elizaveta Mukhaleva (20602550)

"…We believe that BaNDyT is the first software package to include specialized and advanced features for analyzing MD simulation trajectories using a probabilistic graphical network model. We describe here the software’s uses, the methods associated with it, and a comprehensive Python interface to the underlying generalist BNM code. …"

BaNDyT: Bayesian Network Modeling of Molecular Dynamics Trajectories حسب Elizaveta Mukhaleva (20602550)

"…We believe that BaNDyT is the first software package to include specialized and advanced features for analyzing MD simulation trajectories using a probabilistic graphical network model. We describe here the software’s uses, the methods associated with it, and a comprehensive Python interface to the underlying generalist BNM code. …"

BaNDyT: Bayesian Network Modeling of Molecular Dynamics Trajectories حسب Elizaveta Mukhaleva (20602550)

"…We believe that BaNDyT is the first software package to include specialized and advanced features for analyzing MD simulation trajectories using a probabilistic graphical network model. We describe here the software’s uses, the methods associated with it, and a comprehensive Python interface to the underlying generalist BNM code. …"

code implementing the finite element method and finite difference method from Hybrid PDE-ODE Models for Efficient Simulation of Infection Spread in Epidemiology حسب Kristina Maier (20520371)

"…This dataset contains code implementing the finite element method based on Kaskade 7 (C++) and code implementing the finite difference method (Python) for the development of hybrid PDE-ODE models aimed at efficiently simulating infection spread in epidemiology. …"

PTPC-UHT bounce حسب David Parry (22169299)

"…<br>It contains the full Python implementation of the PTPC bounce model (<code>PTPC_UHT_bounce.py</code>) and representative outputs used to generate the figures in the paper. …"

HaPy-Bug – Human Annotated Python Bug Resolution Dataset حسب Piotr Przymus (14564009)

"…Additionally, we explore its potential applications in bug tracking, the analysis of bug-fixing practices, and the development of repository analysis tools. …"

ALAAM models for the Deezer networks, with liking “alternative” music as the outcome variable. حسب Alex Stivala (8356257)

الموضوعات:

Apple point cloud generated by python script. حسب Xiaoyang Liu (1815211)

Models estimated using ALAAMEE for the Deezer networks, with liking jazz as the outcome variable. حسب Alex Stivala (8356257)

الموضوعات:

Overview of the SBML models used in this study. The collection of models was retrieved from Biomodels [43] and a previously reported collection of SBML benchmark models [11]. The n... حسب Paul van Lent (16876977)

الموضوعات:

Jaxkineticmodel allows for hybridizing kinetic models with neural networks. حسب Paul van Lent (16876977)

الموضوعات:

Analysis of convergence properties for a collection of SBML models. حسب Paul van Lent (16876977)

الموضوعات:

EFGs: A Complete and Accurate Implementation of Ertl’s Functional Group Detection Algorithm in RDKit حسب Gonzalo Colmenarejo (650249)

"…In this paper, a new RDKit/Python implementation of the algorithm is described, that is both accurate and complete. …"

2D Orthogonal Planes Split: <b>Python</b> and <b>MATLAB</b> code | <b>Source Images</b> for Figures حسب Nektarios Valous (20715650)

"…The output files generated by the code include results from both Python and MATLAB implementations; these output images are provided as validation, demonstrating that both implementations produce matching results.…"

Python file of the computational framework. حسب Benoit Haut (9753029)

Fitting a feast/famine cycle to a glycolysis model. حسب Paul van Lent (16876977)

الموضوعات:

The format of the electrode csv file حسب Joseph James Tharayil (21416715)

"…To enable efficient calculation of extracellular signals from large neural network simulations, we have developed <i>BlueRecording</i>, a pipeline consisting of standalone Python code, along with extensions to the Neurodamus simulation control application, the CoreNEURON computation engine, and the SONATA data format, to permit online calculation of such signals. …"

The format of the simulation reports حسب Joseph James Tharayil (21416715)

"…To enable efficient calculation of extracellular signals from large neural network simulations, we have developed <i>BlueRecording</i>, a pipeline consisting of standalone Python code, along with extensions to the Neurodamus simulation control application, the CoreNEURON computation engine, and the SONATA data format, to permit online calculation of such signals. …"

Comparison of BlueRecording with existing tools حسب Joseph James Tharayil (21416715)

"…To enable efficient calculation of extracellular signals from large neural network simulations, we have developed <i>BlueRecording</i>, a pipeline consisting of standalone Python code, along with extensions to the Neurodamus simulation control application, the CoreNEURON computation engine, and the SONATA data format, to permit online calculation of such signals. …"

The format of the weights file حسب Joseph James Tharayil (21416715)

"…To enable efficient calculation of extracellular signals from large neural network simulations, we have developed <i>BlueRecording</i>, a pipeline consisting of standalone Python code, along with extensions to the Neurodamus simulation control application, the CoreNEURON computation engine, and the SONATA data format, to permit online calculation of such signals. …"