EthoPy: Reproducible Behavioral Neuroscience Made Simple by Alexandros Evangelou (22235917)

Simple implementation examples of agent AI on free energy calculation and phase-field simulation by Toshiyuki Koyama (22828581)

“…</p> <p>Using Gibbs energy calculations and diffusion simulations as examples, we demonstrated the implementation method and usefulness of simple agent AI, where sample python codes are distributed as supplemental materials.…”

Workflow of a typical Epydemix run. by Nicolò Gozzi (8837522)

“…<div><p>We present Epydemix, an open-source Python package for the development and calibration of stochastic compartmental epidemic models. …”

Finites differences python code to solve CH equation with a source term and Comsol routine to solve Brusselator equation in radial domains. by Giulio Facchini (9031490)

“…<p dir="ltr"><b><i>* Cahn-Hilliard simulations *</i></b><br>Finite difference code implementing the modified Cahn Hilliard equation with a forward Euler scheme and the possibility to parallelize the solver using the numba python library.…”

Workflow of segmentation model creation and application. by Vincent Hickl (16947429)

Overview of generalized weighted averages. by Nobuhito Manome (8882084)

“…GWA-UCB1 is a two-parameter generalization of the balance between exploration and exploitation in UCB1 and can be implemented with a simple modification of the UCB1 formula. …”

CSMILES: A Compact, Human-Readable SMILES Extension for Conformations by James W. Furness (22319738)

“…A two-way conversion from three-dimensional (3D) structure to CSMILES has been implemented, and the article is accompanied by a Python code which effectuates such conversions. …”

CSMILES: A Compact, Human-Readable SMILES Extension for Conformations by James W. Furness (22319738)

“…A two-way conversion from three-dimensional (3D) structure to CSMILES has been implemented, and the article is accompanied by a Python code which effectuates such conversions. …”

Bayesian Changepoint Detection via Logistic Regression and the Topological Analysis of Image Series by Andrew M. Thomas (712104)

“…The method also successfully recovers the location and nature of changes in more traditional changepoint tasks. An implementation of our method is available in the Python package bclr.…”

Parallel Sampling of Decomposable Graphs Using Markov Chains on Junction Trees by Mohamad Elmasri (19421498)

“…We find that our parallel sampler yields improved mixing properties in comparison to the single-move variate, and outperforms current state-of-the-art methods in terms of accuracy and computational efficiency. The implementation of our work is available in the Python package parallelDG. …”

<b>Testing AI Applications Under Nondeterminism, Drift, and Resource Constraints</b> by Nariman Mani (21380459)

“…<ul><li>A <b>Python repo</b> with minimal implementations of all five layers<br>(<b>COL</b>, <b>SCL</b>, <b>CDM</b>, <b>RPE</b>, <b>RAS</b>) plus an <b>orchestrator</b> and utilities.…”

The artifacts and data for the paper "DD4AV: Detecting Atomicity Violations in Interrupt-Driven Programs with Guided Concolic Execution and Filtering" (OOPSLA 2025) by zixuan yuan (17602152)

“…</li></ul></li><li><code><strong>test</strong></code>: A few simple examples that are easy to understand and can be used to verify the installation.…”

Globus Compute: Federated FaaS for Integrated Research Solutions by eRNZ Admin (6438486)

“…</p><p dir="ltr">Globus Compute [2] is a Function-as-a-Service platform designed to provide a scalable, secure, and simple interface to HPC resources. Globus Compute implements a federated model via which users may deploy endpoints on arbitrary remote computers, from the edge to high performance computing (HPC) cluster, and they may then invoke Python functions on those endpoints via a reliable cloud-hosted service. …”

Data and some code used in the paper:<b>Expansion quantization network: A micro-emotion detection and annotation framework</b> by Zhou (20184816)

“…The text emotion datasets it annotates are no longer simple single-label or multi-label, but macro-emotions and micro-emotions with continuous values ​​of emotion intensity. …”

MCCN Case Study 3 - Select optimal survey locality by Donald Hobern (21435904)

“…</p><p dir="ltr">This is a simple implementation that uses four environmental attributes imported for all Australia (or a subset like NSW) at a moderate grid scale:</p><ol><li>Digital soil maps for key soil properties over New South Wales, version 2.0 - SEED - see <a href="https://esoil.io/TERNLandscapes/Public/Pages/SLGA/ProductDetails-SoilAttributes.html" target="_blank">https://esoil.io/TERNLandscapes/Public/Pages/SLGA/ProductDetails-SoilAttributes.html</a></li><li>ANUCLIM Annual Mean Rainfall raster layer - SEED - see <a href="https://datasets.seed.nsw.gov.au/dataset/anuclim-annual-mean-rainfall-raster-layer" target="_blank">https://datasets.seed.nsw.gov.au/dataset/anuclim-annual-mean-rainfall-raster-layer</a></li><li>ANUCLIM Annual Mean Temperature raster layer - SEED - see <a href="https://datasets.seed.nsw.gov.au/dataset/anuclim-annual-mean-temperature-raster-layer" target="_blank">https://datasets.seed.nsw.gov.au/dataset/anuclim-annual-mean-temperature-raster-layer</a></li></ol><h4><b>Dependencies</b></h4><ul><li>This notebook requires Python 3.10 or higher</li><li>Install relevant Python libraries with: <b>pip install mccn-engine rocrate</b></li><li>Installing mccn-engine will install other dependencies</li></ul><h4><b>Overview</b></h4><ol><li>Generate STAC metadata for layers from predefined configuratiion</li><li>Load data cube and exclude nodata values</li><li>Scale all variables to a 0.0-1.0 range</li><li>Select four layers for comparison (soil organic carbon 0-30 cm, soil pH 0-30 cm, mean annual rainfall, mean annual temperature)</li><li>Select 10 random points within NSW</li><li>Generate 10 new layers representing standardised environmental distance between one of the selected points and all other points in NSW</li><li>For every point in NSW, find the lowest environmental distance to any of the selected points</li><li>Select the point in NSW that has the highest value for the lowest environmental distance to any selected point - this is the most different point</li><li>Clean up and save results to RO-Crate</li></ol><p><br></p>…”

Data Sheet 1_COCαDA - a fast and scalable algorithm for interatomic contact detection in proteins using Cα distance matrices.pdf by Rafael Pereira Lemos (9104911)

“…COCαDA demonstrated superior performance compared to the other methods, achieving on average 6x faster computation times than advanced data structures like k-d trees from NS, in addition to being simpler to implement and fully customizable. The presented tool facilitates exploratory and large-scale analyses of interatomic contacts in proteins in a simple and efficient manner, also enabling the integration of results with other tools and pipelines. …”

Comprehensive Fluid and Gravitational Dynamics Script for General Symbolic Navier-Stokes Calculations and Validation by Stylianos Touloumidis (19938747)

“…It provides a flexible foundation on which theoretical assumptions can be validated, and practical calculations performed. Implemented in Python with symbolic calculations, the script facilitates in-depth analysis of complex flow patterns and makes advanced mathematical computations more accessible. …”

Ambient Air Pollutant Dynamics (2010–2025) and the Exceptional Winter 2016–17 Pollution Episode: Implications for a Uranium/Arsenic Exposure Event by Thomas Clemens Carmine (19756929)

“…<br><br><b>Missing-Data Handling & Imputation:</b></p><p dir="ltr">The following sequential steps were applied to create a complete and consistent daily time series suitable for analysis (presented in the Imputed_AP_Data_Zurich_2010-25 sheet), particularly addressing the absence of routine PM₂.₅ measurements prior to January 2016. The full implementation is detailed in the accompanying Python script (Imputation_Air_Pollutants_NABEL.py). …”

<b>Altered cognitive processes shape tactile perception in autism.</b> (data) by Ourania Semelidou (19178362)

“…The perceptual decision-making setup was controlled by Bpod (Sanworks) through scripts in Python (PyBpod, https://pybpod.readthedocs.io/en/latest/). …”