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Dialogue Propositional Content Replacement (DPCR) code
Published 2025“…<p dir="ltr">This resource consists of a Python notebook with code that was implemented for a research project that developed a novel method for testing the components of theories of (dialogue) coherence through utterance substitution. …”
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Supporting data for "Interpreting complex ecological patterns and processes across differentscales using Artificial Intelligence"
Published 2025“…<p dir="ltr">This thesis bridges the gap between field observations and the empirical understanding of ecological systems by applying AI models at different spatial scales and hierarchical levels to study ecological complexity. The detailed implementation, source code and demo dataset are included in dedicated folders for each chapter.…”
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Five Operator Lattice Simulation
Published 2025“…<p dir="ltr">This dataset contains the Python simulation code and supporting documentation for the paper <i>A Five-Operator Lattice of Consciousness: A Logical Framework for Mediation Between Implicit and Explicit Processing</i> (McDaniel, 2025).…”
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Simple implementation examples of agent AI on free energy calculation and phase-field simulation
Published 2025“…</p> <p>Using Gibbs energy calculations and diffusion simulations as examples, we demonstrated the implementation method and usefulness of simple agent AI, where sample python codes are distributed as supplemental materials.…”
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The format of the electrode csv file
Published 2025“…To enable efficient calculation of extracellular signals from large neural network simulations, we have developed <i>BlueRecording</i>, a pipeline consisting of standalone Python code, along with extensions to the Neurodamus simulation control application, the CoreNEURON computation engine, and the SONATA data format, to permit online calculation of such signals. …”
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The format of the simulation reports
Published 2025“…To enable efficient calculation of extracellular signals from large neural network simulations, we have developed <i>BlueRecording</i>, a pipeline consisting of standalone Python code, along with extensions to the Neurodamus simulation control application, the CoreNEURON computation engine, and the SONATA data format, to permit online calculation of such signals. …”
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Comparison of BlueRecording with existing tools
Published 2025“…To enable efficient calculation of extracellular signals from large neural network simulations, we have developed <i>BlueRecording</i>, a pipeline consisting of standalone Python code, along with extensions to the Neurodamus simulation control application, the CoreNEURON computation engine, and the SONATA data format, to permit online calculation of such signals. …”
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The format of the weights file
Published 2025“…To enable efficient calculation of extracellular signals from large neural network simulations, we have developed <i>BlueRecording</i>, a pipeline consisting of standalone Python code, along with extensions to the Neurodamus simulation control application, the CoreNEURON computation engine, and the SONATA data format, to permit online calculation of such signals. …”
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BaNDyT: Bayesian Network Modeling of Molecular Dynamics Trajectories
Published 2025“…We describe here the software’s uses, the methods associated with it, and a comprehensive Python interface to the underlying generalist BNM code. …”
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BaNDyT: Bayesian Network Modeling of Molecular Dynamics Trajectories
Published 2025“…We describe here the software’s uses, the methods associated with it, and a comprehensive Python interface to the underlying generalist BNM code. …”
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BaNDyT: Bayesian Network Modeling of Molecular Dynamics Trajectories
Published 2025“…We describe here the software’s uses, the methods associated with it, and a comprehensive Python interface to the underlying generalist BNM code. …”
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Data sets and coding scripts for research on sensory processing in ADHD and ASD
Published 2025“…</p><h4>Contents</h4><p dir="ltr">The repository includes:</p><ul><li>Questionnaire data (ASRS, BAPQ)</li><li>Visual orientation discrimination thresholds (vertical and oblique)</li><li>Demographic variables (age, gender)</li><li>Clinical vs. non-clinical group labels</li><li>Propensity score matching files and reproducible Python code</li><li>JASP analysis files and outputs</li><li>Study documentation and methodological details</li></ul><p dir="ltr">These data support the study’s finding that ADHD and ASD show distinct sensory signatures: clinical ADHD was associated with reduced oblique sensitivity, while clinical ASD showed enhanced vertical discrimination relative to matched non-clinical controls. …”
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Code and data for reproducing the results in the original paper of DML-Geo
Published 2025“…<p dir="ltr">This asset provides all the code and data for reproducing the results (figures and statistics) in the original paper of DML-Geo</p><h2>Main Files:</h2><p dir="ltr"><b>main.ipynb</b>: the main notebook to generate all the figures and data presented in the paper</p><p dir="ltr"><b>data_generator.py</b>: used for generating synthetic datasets to validate the performance of different models</p><p dir="ltr"><b>dml_models.py</b>: Contains implementations of different Double Machine Learning variants used in this study.…”